Search Results

Transitions in chromatin conformation shaped by fatty acids and the circadian clock underlie hepatic transcriptional reorganization in obese mice.

• Authors : Pacheco-Bernal I; Departamento de Biología Celular y Fisiología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, 04510, Mexico City, Mexico.; Becerril-Pérez F

Subjects: Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/genetics ; Liver*/Liver*/Liver*/metabolism

• Source: Cellular and molecular life sciences : CMLS [Cell Mol Life Sci] 2024 Jul 26; Vol. 81 (1), pp. 309. Date of Electronic Publication: 2024 Jul 26.Publisher: Springer Country of Publication: Switzerland NLM ID: 9705402 Publication Model: Electronic Cited Medium: Internet ISSN: 1420-9071

Record details

[An identification method of chromatin topological associated domains based on spatial density clustering].

• Authors : Gong H; Institute for Advanced Materials and Technology, University of Science and Technology Beijing, Beijing 100083, P. R. China.; Shunde Innovation School, University of Science and Technology Beijing, Foshan, Guangdong 528399, P. R. China.

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromatin*/Chromatin*/Chromatin*/chemistry; Cluster Analysis

• Source: Sheng wu yi xue gong cheng xue za zhi = Journal of biomedical engineering = Shengwu yixue gongchengxue zazhi [Sheng Wu Yi Xue Gong Cheng Xue Za Zhi] 2024 Jun 25; Vol. 41 (3), pp. 552-559.Publisher: Sichuan Sheng sheng wu yi xue gong cheng xue hui Country of Publication: China NLM ID: 9426398 Publication Model: Print Cited Medium: Print

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Prediction of cell-type-specific cohesin-mediated chromatin loops based on chromatin state.

• Authors : Liu L; Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China, Quzhou 324003, China. Electronic address: .; Jia R

Subjects: Chromosomal Proteins, Non-Histone*/Chromosomal Proteins, Non-Histone*/Chromosomal Proteins, Non-Histone*/metabolism ; Chromosomal Proteins, Non-Histone*/Chromosomal Proteins, Non-Histone*/Chromosomal Proteins, Non-Histone*/genetics ; Cell Cycle Proteins*/Cell Cycle Proteins*/Cell Cycle Proteins*/metabolism

• Source: Methods (San Diego, Calif.) [Methods] 2024 Jun; Vol. 226, pp. 151-160. Date of Electronic Publication: 2024 Apr 24.Publisher: Academic Press Country of Publication: United States NLM ID: 9426302 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

Record details

Systematic epigenome editing captures the context-dependent instructive function of chromatin modifications.

• Authors : Policarpi C; Epigenetics and Neurobiology Unit, European Molecular Biology Laboratory (EMBL), Rome, Italy.; Munafò M

Subjects: Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/genetics ; Histones*/Histones*/Histones*/metabolism

• Source: Nature genetics [Nat Genet] 2024 Jun; Vol. 56 (6), pp. 1168-1180. Date of Electronic Publication: 2024 May 09.Publisher: Nature Pub. Co Country of Publication: United States NLM ID: 9216904 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Identifying dysregulated regions in amyotrophic lateral sclerosis through chromatin accessibility outliers.

• Authors : Çelik MH; Department of Computer Science, University of California Irvine, Irvine, CA, USA; Center for Complex Biological Systems, University of California Irvine, Irvine, CA, USA.

Subjects: Amyotrophic Lateral Sclerosis*/Amyotrophic Lateral Sclerosis*/Amyotrophic Lateral Sclerosis*/genetics ; Amyotrophic Lateral Sclerosis*/Amyotrophic Lateral Sclerosis*/Amyotrophic Lateral Sclerosis*/metabolism ; Chromatin*/Chromatin*/Chromatin*/metabolism

• Source: HGG advances [HGG Adv] 2024 Jul 18; Vol. 5 (3), pp. 100318. Date of Electronic Publication: 2024 Jun 13.Publisher: Elsevier Inc Country of Publication: United States NLM ID: 101772885 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Cellular zinc status alters chromatin accessibility and binding of p53 to DNA.

• Authors : Ocampo D; Department of Biochemistry, University of Colorado, Boulder, CO, USA.; Damon LJ

Subjects: Tumor Suppressor Protein p53*/Tumor Suppressor Protein p53*/Tumor Suppressor Protein p53*/metabolism ; Tumor Suppressor Protein p53*/Tumor Suppressor Protein p53*/Tumor Suppressor Protein p53*/genetics ; Chromatin*/Chromatin*/Chromatin*/metabolism

• Source: Life science alliance [Life Sci Alliance] 2024 Jul 05; Vol. 7 (9). Date of Electronic Publication: 2024 Jul 05 (Print Publication: 2024).Publisher: Life Science Alliance, LLC Country of Publication: United States NLM ID: 101728869 Publication Model: Electronic-Print Cited Medium: Internet

Record details

Linking Aging to Cancer: The Role of Chromatin Biology.

• Authors : Corveleyn L; Laboratory of Pharmaceutical Biotechnology, Department of Pharmaceutics, Ghent University, Ghent, Belgium.; Sen P

Subjects: Aging*/Aging*/Aging*/genetics ; Aging*/Aging*/Aging*/physiology ; Chromatin*/Chromatin*/Chromatin*/genetics

• Source: The journals of gerontology. Series A, Biological sciences and medical sciences [J Gerontol A Biol Sci Med Sci] 2024 Jul 01; Vol. 79 (7).Publisher: published on behalf of the Gerontological Society of America by Oxford University Press Country of Publication: United States NLM ID: 9502837

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Expression Proteomics and Histone Analysis Reveal Extensive Chromatin Network Changes and a Role for Histone Tail Trimming during Cellular Differentiation.

• Authors : Oliviero G; Systems Biology Ireland, School of Medicine, University College Dublin, D04 V1W8 Dublin, Ireland.; Conway Institute of Biomolecular & Biomedical Research, University College Dublin, D04 V1W8 Dublin, Ireland.

Subjects: Histones*/Histones*/Histones*/metabolism ; Cell Differentiation* ; Chromatin*/Chromatin*/Chromatin*/metabolism

• Source: Biomolecules [Biomolecules] 2024 Jun 24; Vol. 14 (7). Date of Electronic Publication: 2024 Jun 24.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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A high-throughput synthetic biology approach for studying combinatorial chromatin-based transcriptional regulation.

• Authors : Alcantar MA; Department of Biological Engineering, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA; Institute for Medical Engineering and Science, MIT, Cambridge, MA 02139, USA.

Subjects: Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/genetics ; Synthetic Biology*/Synthetic Biology*/Synthetic Biology*/methods

• Source: Molecular cell [Mol Cell] 2024 Jun 20; Vol. 84 (12), pp. 2382-2396.e9.Publisher: Cell Press Country of Publication: United States NLM ID: 9802571 Publication Model: Print Cited Medium: Internet ISSN: 1097-4164

Record details

FACT maintains chromatin architecture and thereby stimulates RNA polymerase II pausing during transcription in vivo.

• Authors : Žumer K; Max Planck Institute for Multidisciplinary Sciences, Department of Molecular Biology, Am Fassberg 11, 37077 Göttingen, Germany. Electronic address: .; Ochmann M

Subjects: RNA Polymerase II*/RNA Polymerase II*/RNA Polymerase II*/metabolism ; RNA Polymerase II*/RNA Polymerase II*/RNA Polymerase II*/genetics ; Transcriptional Elongation Factors*/Transcriptional Elongation Factors*/Transcriptional Elongation Factors*/metabolism

• Source: Molecular cell [Mol Cell] 2024 Jun 06; Vol. 84 (11), pp. 2053-2069.e9. Date of Electronic Publication: 2024 May 28.Publisher: Cell Press Country of Publication: United States NLM ID: 9802571 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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scaDA: A novel statistical method for differential analysis of single-cell chromatin accessibility sequencing data.

• Authors : Zhao F; Department of Biostatistics, University of Florida, Gainesville, Florida, United States of America.; Ma X

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/chemistry

• Source: PLoS computational biology [PLoS Comput Biol] 2024 Aug 02; Vol. 20 (8), pp. e1011854. Date of Electronic Publication: 2024 Aug 02 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

Record details

Advances in regulation of homeostasis through chromatin modifications by airway commensals.

• Authors : Connor MG; Institut Pasteur, Université de Paris Cité, Unité Chromatine et Infection, F-75015 Paris, France. Electronic address: .; Hamon MA

Subjects: Homeostasis* ; Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/genetics

• Source: Current opinion in microbiology [Curr Opin Microbiol] 2024 Aug; Vol. 80, pp. 102505. Date of Electronic Publication: 2024 Jun 26.Publisher: Current Biology Country of Publication: England NLM ID: 9815056 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Probing chromatin condensation dynamics in live cells using interferometric scattering correlation spectroscopy.

• Authors : Hsiao YT; Institute of Atomic and Molecular Sciences (IAMS), Academia Sinica, Taipei, Taiwan.; Liao IH

Subjects: Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/chemistry; Humans

• Source: Communications biology [Commun Biol] 2024 Jun 24; Vol. 7 (1), pp. 763. Date of Electronic Publication: 2024 Jun 24.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

Record details

Phase separation and inheritance of repressive chromatin domains.

• Authors : Akilli N; Institute of Human Genetics, CNRS, University of Montpellier, Montpellier, France. Electronic address: https://twitter.com/@sinmerank.; Cheutin T

Subjects: Heterochromatin*/Heterochromatin*/Heterochromatin*/genetics ; Heterochromatin*/Heterochromatin*/Heterochromatin*/metabolism ; Epigenesis, Genetic*

• Source: Current opinion in genetics & development [Curr Opin Genet Dev] 2024 Jun; Vol. 86, pp. 102201. Date of Electronic Publication: 2024 May 02.Publisher: Elsevier Country of Publication: England NLM ID: 9111375 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0380

Record details

Mechanistic drivers of chromatin organization into compartments.

• Authors : Harris HL; Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Emile St, Omaha 68198, NE, USA.; Rowley MJ

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromatin*/Chromatin*/Chromatin*/metabolism ; CCCTC-Binding Factor*/CCCTC-Binding Factor*/CCCTC-Binding Factor*/metabolism

• Source: Current opinion in genetics & development [Curr Opin Genet Dev] 2024 Jun; Vol. 86, pp. 102193. Date of Electronic Publication: 2024 Apr 15.Publisher: Elsevier Country of Publication: England NLM ID: 9111375 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0380

Record details

Chromatin modifications integrate cis genomic context to instruct transcriptional outputs.

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromatin*/Chromatin*/Chromatin*/metabolism ; Transcription, Genetic*

• Source: Nature genetics [Nat Genet] 2024 Jun; Vol. 56 (6), pp. 1051-1052.Publisher: Nature Pub. Co Country of Publication: United States NLM ID: 9216904 Publication Model: Print Cited Medium: Internet ISSN: 1546-1718

Record details

ARID1A regulates DNA repair through chromatin organization and its deficiency triggers DNA damage-mediated anti-tumor immune response.

• Authors : Bakr A; Division of Cancer Epigenomics, German Cancer Research Center (DKFZ), INF280, 69120 Heidelberg, Germany.; Corte GD

Subjects: Chromatin*/Chromatin*/Chromatin*/metabolism ; DNA Repair*/DNA Repair*/DNA Repair*/genetics ; DNA-Binding Proteins*/DNA-Binding Proteins*/DNA-Binding Proteins*/deficiency

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jun 10; Vol. 52 (10), pp. 5698-5719.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

Record details

Chromatin structure and dynamics: one nucleosome at a time.

• Authors : Presman DM; Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE), Facultad de Ciencias Exactas y Naturales, CONICET-Universidad de Buenos Aires, C1428EGA, Buenos Aires, Argentina. .; Departamento de Fisiología, Biología Molecular y Celular, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, C1428EGA, Buenos Aires, Argentina. .

Subjects: Nucleosomes*/Nucleosomes*/Nucleosomes*/metabolism ; Nucleosomes*/Nucleosomes*/Nucleosomes*/chemistry ; Chromatin*/Chromatin*/Chromatin*/metabolism

• Source: Histochemistry and cell biology [Histochem Cell Biol] 2024 Jul; Vol. 162 (1-2), pp. 79-90. Date of Electronic Publication: 2024 Apr 12.Publisher: Springer Country of Publication: Germany NLM ID: 9506663 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1432-119X

Record details

Emerging toolkits for decoding the co-occurrence of modified histones and chromatin proteins.

• Authors : Pepin AS; Institute of Functional Epigenetics (IFE), Helmholtz Zentrum München, Neuherberg, Germany.; Schneider R

Subjects: Histones*/Histones*/Histones*/metabolism ; Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/genetics

• Source: EMBO reports [EMBO Rep] 2024 Aug; Vol. 25 (8), pp. 3202-3220. Date of Electronic Publication: 2024 Aug 02.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 100963049 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Exploring the epigenetic profile of ID4 in breast cancer: bioinformatic insights into methylation patterns and chromatin accessibility dynamics.

• Authors : Nasif D; Institute of Histology and Embryology, National Council of Scientific and Technological Research (CONICET), Parque General San Martin, 5500, Mendoza, Argentina.; Laurito S

Subjects: Inhibitor of Differentiation Proteins*/Inhibitor of Differentiation Proteins*/Inhibitor of Differentiation Proteins*/genetics ; Inhibitor of Differentiation Proteins*/Inhibitor of Differentiation Proteins*/Inhibitor of Differentiation Proteins*/metabolism ; Breast Neoplasms*/Breast Neoplasms*/Breast Neoplasms*/genetics

• Source: Breast cancer research and treatment [Breast Cancer Res Treat] 2024 Aug; Vol. 207 (1), pp. 91-101. Date of Electronic Publication: 2024 May 03.Publisher: Kluwer Academic Country of Publication: Netherlands NLM ID: 8111104 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

Record details

Vertebrate centromere architecture: from chromatin threads to functional structures.

• Authors : Andrade Ruiz L; Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences, Utrecht, Netherlands.; University Medical Center Utrecht, Utrecht, Netherlands.

Subjects: Centromere*/Centromere*/Centromere*/metabolism ; Centromere*/Centromere*/Centromere*/ultrastructure ; Chromatin*/Chromatin*/Chromatin*/metabolism

• Source: Chromosoma [Chromosoma] 2024 Jul; Vol. 133 (3), pp. 169-181. Date of Electronic Publication: 2024 Jun 10.Publisher: Springer-Verlag Country of Publication: Austria NLM ID: 2985138R Publication Model: Print-Electronic Cited Medium: Internet ISSN:

Record details

Conserved functions of chromatin regulators in basal Archaeplastida.

• Authors : Kerckhofs E; Epigenetics of Plants, Institute for Biology, Freie Universität Berlin, Berlin, Germany.; Schubert D

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromatin*/Chromatin*/Chromatin*/metabolism; Gene Expression Regulation, Plant

• Source: The Plant journal : for cell and molecular biology [Plant J] 2024 Jun; Vol. 118 (5), pp. 1301-1311. Date of Electronic Publication: 2023 Sep 07.Publisher: Blackwell Scientific Publishers and BIOS Scientific Publishers in association with the Society for Experimental Biology Country of Publication: England NLM ID:

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SMARCC2 silencing suppresses oncogenic activation through modulation of chromatin accessibility in breast cancer.

• Authors : Sun Z; Jiangsu Key Laboratory of Brain Disease and Bioinformation, Xuzhou Medical University, Xuzhou, China.; Wang Z

Subjects: Breast Neoplasms*/Breast Neoplasms*/Breast Neoplasms*/genetics ; Breast Neoplasms*/Breast Neoplasms*/Breast Neoplasms*/metabolism ; Breast Neoplasms*/Breast Neoplasms*/Breast Neoplasms*/pathology

• Source: Biochemical and biophysical research communications [Biochem Biophys Res Commun] 2024 Sep 10; Vol. 724, pp. 150223. Date of Electronic Publication: 2024 Jun 04.Publisher: Elsevier Country of Publication: United States NLM ID: 0372516 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

Record details

Hi-Tag: a simple and efficient method for identifying protein-mediated long-range chromatin interactions with low cell numbers.

• Authors : Qi X; Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education and Key Laboratory of Swine Genetics and Breeding of Ministry of Agriculture, College of Animal Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.; Zhang L

Subjects: Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/genetics; Humans

• Source: Science China. Life sciences [Sci China Life Sci] 2024 May; Vol. 67 (5), pp. 1027-1034. Date of Electronic Publication: 2024 Jan 23.Publisher: Science China Press, co-published with Springer Country of Publication: China NLM ID: 101529880 Publication Model: Print-Electronic Cited Medium:

Record details

Decoding the genomic landscape of chromatin-associated biomolecular condensates.

• Authors : Yu Z; State Key Laboratory of Cardiovascular Diseases and Medical Innovation Center, Institute for Regenerative Medicine, Department of Neurosurgery, Shanghai East Hospital, Shanghai Key Laboratory of Signaling and Disease Research, Frontier Science Center for Stem Cell Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China.; Wang Q

Subjects: Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/genetics ; Biomolecular Condensates*/Biomolecular Condensates*/Biomolecular Condensates*/metabolism

• Source: Nature communications [Nat Commun] 2024 Aug 13; Vol. 15 (1), pp. 6952. Date of Electronic Publication: 2024 Aug 13.Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN:

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Histone variant H2BE enhances chromatin accessibility in neurons to promote synaptic gene expression and long-term memory.

• Authors : Feierman ER; Neuroscience Graduate Group, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA; Department of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA

Subjects: Histones*/Histones*/Histones*/metabolism ; Histones*/Histones*/Histones*/genetics ; Chromatin*/Chromatin*/Chromatin*/metabolism

• Source: Molecular cell [Mol Cell] 2024 Aug 08; Vol. 84 (15), pp. 2822-2837.e11. Date of Electronic Publication: 2024 Jul 17.Publisher: Cell Press Country of Publication: United States NLM ID: 9802571 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Single-Cell Chromatin Accessibility Analysis Reveals Subgroup-Specific TF-NTR Regulatory Circuits in Medulloblastoma.

• Authors : Gao X; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation, Beijing, 100101, China.; University of Chinese Academy of Sciences, Beijing, 100049, China.

Subjects: Medulloblastoma*/Medulloblastoma*/Medulloblastoma*/genetics ; Medulloblastoma*/Medulloblastoma*/Medulloblastoma*/metabolism ; Single-Cell Analysis*/Single-Cell Analysis*/Single-Cell Analysis*/methods

• Source: Advanced science (Weinheim, Baden-Wurttemberg, Germany) [Adv Sci (Weinh)] 2024 Aug; Vol. 11 (30), pp. e2309554. Date of Electronic Publication: 2024 Jun 17.Publisher: WILEY-VCH Country of Publication: Germany NLM ID: 101664569 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2198-3844

Record details

Genome-wide mapping of DNase I hypersensitive sites revealed differential chromatin accessibility and regulatory DNA elements under drought stress in rice cultivars.

• Authors : Rajkumar MS; School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India.; Tembhare K

Subjects: Oryza*/Oryza*/Oryza*/genetics ; Oryza*/Oryza*/Oryza*/physiology ; Deoxyribonuclease I*/Deoxyribonuclease I*/Deoxyribonuclease I*/metabolism

• Source: The Plant journal : for cell and molecular biology [Plant J] 2024 Aug; Vol. 119 (4), pp. 2063-2079. Date of Electronic Publication: 2024 Jun 10.Publisher: Blackwell Scientific Publishers and BIOS Scientific Publishers in association with the Society for Experimental Biology Country of Publication: England NLM ID:

Record details

Research progress on the effect of sperm chromatin integrity on function and its detection methods.

• Authors : Liu D; Department of Reproduction Medicine, Baoding No.1 Central Hospital, Baoding 071000, China.; Graduate School, Hebei Medical University, Shijiazhuang 050017, China.

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromatin*/Chromatin*/Chromatin*/metabolism ; Spermatozoa*/Spermatozoa*/Spermatozoa*/physiology

• Source: Yi chuan = Hereditas [Yi Chuan] 2024 Jul; Vol. 46 (7), pp. 511-529.Publisher: Ke xue chu ban she Country of Publication: China NLM ID: 9436478 Publication Model: Print Cited Medium: Print ISSN: 0253-9772 (Print)

Record details

A single-cell atlas of chromatin accessibility in mouse organogenesis.

• Authors : Sun K; School of Medicine, Tsinghua University, Beijing, China.; Peking-Tsinghua-NIBS Joint Graduate Program, Tsinghua University, Beijing, China.

Subjects: Organogenesis*/Organogenesis*/Organogenesis*/genetics ; Single-Cell Analysis* ; Gene Expression Regulation, Developmental*

• Source: Nature cell biology [Nat Cell Biol] 2024 Jul; Vol. 26 (7), pp. 1200-1211. Date of Electronic Publication: 2024 Jul 08.Publisher: Macmillan Magazines Ltd Country of Publication: England NLM ID: 100890575 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

Record details

Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq.

• Authors : Sun K; School of Medicine, Tsinghua University, Beijing, China.; Peking University-Tsinghua University-National Institute of Biological Sciences Joint Graduate Program, Tsinghua University, Beijing, China.

Subjects: Zebrafish*/Zebrafish*/Zebrafish*/embryology ; Zebrafish*/Zebrafish*/Zebrafish*/genetics ; Zebrafish*/Zebrafish*/Zebrafish*/metabolism

• Source: Nature cell biology [Nat Cell Biol] 2024 Jul; Vol. 26 (7), pp. 1187-1199. Date of Electronic Publication: 2024 Jul 08.Publisher: Macmillan Magazines Ltd Country of Publication: England NLM ID: 100890575 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Epigenetic regulation of immune cells in systemic lupus erythematosus: insight from chromatin accessibility.

• Authors : Gao ZX; Department of Epidemiology and Biostatistics, School of Public Health, Anhui Medical University, Hefei, Anhui, China.; Department of Epidemiology, Inflammation and Immune Mediated Diseases Laboratory of Anhui Province, Hefei, Anhui, China.

Subjects: Lupus Erythematosus, Systemic*/Lupus Erythematosus, Systemic*/Lupus Erythematosus, Systemic*/immunology ; Lupus Erythematosus, Systemic*/Lupus Erythematosus, Systemic*/Lupus Erythematosus, Systemic*/genetics ; Epigenesis, Genetic*

• Source: Expert opinion on therapeutic targets [Expert Opin Ther Targets] 2024 Jul; Vol. 28 (7), pp. 637-649. Date of Electronic Publication: 2024 Jul 02.Publisher: Informa Healthcare Country of Publication: England NLM ID: 101127833 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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A continuum of zinc finger transcription factor retention on native chromatin underlies dynamic genome organization.

• Authors : Hu S; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.; China National Center for Bioinformation, Beijing, China.

Subjects: Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/genetics ; CCCTC-Binding Factor*/CCCTC-Binding Factor*/CCCTC-Binding Factor*/metabolism

• Source: Molecular systems biology [Mol Syst Biol] 2024 Jul; Vol. 20 (7), pp. 799-824. Date of Electronic Publication: 2024 May 14.Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Beyond histones: the elusive substrates of chromatin regulators.

• Authors : Mannervik M; Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, Stockholm 10691, Sweden .

Subjects: Drosophila melanogaster*/Drosophila melanogaster*/Drosophila melanogaster*/genetics ; Drosophila melanogaster*/Drosophila melanogaster*/Drosophila melanogaster*/metabolism ; Chromatin*/Chromatin*/Chromatin*/metabolism

• Source: Genes & development [Genes Dev] 2024 Jun 25; Vol. 38 (9-10), pp. 357-359. Date of Electronic Publication: 2024 Jun 25.Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 8711660 Publication Model: Electronic Cited Medium:

Record details

Widespread chromatin context-dependencies of DNA double-strand break repair proteins.

• Authors : Vergara X; Division of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.; Division of Molecular Genetics, Netherlands Cancer Institute, Amsterdam, The Netherlands.

Subjects: DNA Breaks, Double-Stranded* ; DNA End-Joining Repair* ; Chromatin*/Chromatin*/Chromatin*/metabolism

• Source: Nature communications [Nat Commun] 2024 Jun 22; Vol. 15 (1), pp. 5334. Date of Electronic Publication: 2024 Jun 22.Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN:

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Chromatin dynamics and RNA metabolism are double-edged swords for the maintenance of plant genome integrity.

• Authors : Bergis-Ser C; Université Paris-Saclay, CNRS, INRAE, Université d'Evry, Institute of Plant Sciences Paris-Saclay, Orsay, France.; Reji M

Subjects: Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/genetics ; Genome, Plant*

• Source: Nature plants [Nat Plants] 2024 Jun; Vol. 10 (6), pp. 857-873. Date of Electronic Publication: 2024 Apr 24.Publisher: Nature Publishing Group, a division of Macmillan Publishers Limited Country of Publication: England NLM ID: 101651677 Publication Model:

Record details

Advances in plant chromatin.

• Authors : Dvořáčková M; Mendel Centre for Plant Genomics and Proteomics, CEITEC, Masaryk University, Brno, CZ-62500, Czech Republic.; Fajkus J

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromatin*/Chromatin*/Chromatin*/metabolism ; Plants*/Plants*/Plants*/genetics

• Source: The Plant journal : for cell and molecular biology [Plant J] 2024 Jun; Vol. 118 (5), pp. 1281-1283.Publisher: Blackwell Scientific Publishers and BIOS Scientific Publishers in association with the Society for Experimental Biology Country of Publication: England NLM ID:

Record details

Nuclear position and local acetyl-CoA production regulate chromatin state.

• Authors : Willnow P; German Cancer Research Center (DKFZ), Heidelberg, Germany.; Heidelberg University, Heidelberg, Germany.

Subjects: Acetyl Coenzyme A*/Acetyl Coenzyme A*/Acetyl Coenzyme A*/metabolism ; Cell Nucleus*/Cell Nucleus*/Cell Nucleus*/genetics ; Cell Nucleus*/Cell Nucleus*/Cell Nucleus*/metabolism

• Source: Nature [Nature] 2024 Jun; Vol. 630 (8016), pp. 466-474. Date of Electronic Publication: 2024 Jun 05.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

Record details

Chromatin structure in totipotent mouse early preimplantation embryos.

• Authors : Ooga M; Department of Animal Science and Biotechnology, School of Veterinary Medicine, Azabu University, Kanagawa 252-5201, Japan.

Subjects: Chromatin*/Chromatin*/Chromatin*/metabolism ; Blastocyst*/Blastocyst*/Blastocyst*/metabolism; Animals

• Source: The Journal of reproduction and development [J Reprod Dev] 2024 Jun 01; Vol. 70 (3), pp. 152-159. Date of Electronic Publication: 2024 Mar 08.Publisher: Japanese Society of Animal Reproduction Country of Publication: Japan NLM ID: 9438792 Publication Model: Print-Electronic Cited Medium:

Record details

STAG2 mutations regulate 3D genome organization, chromatin loops, and Polycomb signaling in glioblastoma multiforme.

• Authors : Xu W; Department of Genetics and Genome Sciences, Case Comprehensive Cancer Center, Case Western Reserve School of Medicine, Cleveland, Ohio, USA; The Biomedical Sciences Training Program, School of Medicine, Case Western Reserve University, Cleveland, Ohio, USA.

Subjects: Glioblastoma*/Glioblastoma*/Glioblastoma*/genetics ; Glioblastoma*/Glioblastoma*/Glioblastoma*/metabolism ; Glioblastoma*/Glioblastoma*/Glioblastoma*/pathology

• Source: The Journal of biological chemistry [J Biol Chem] 2024 Jun; Vol. 300 (6), pp. 107341. Date of Electronic Publication: 2024 May 03.Publisher: Elsevier Inc. on behalf of American Society for Biochemistry and Molecular Biology Country of Publication: United States NLM ID: 2985121R Publication

Record details

Inseparable RNA binding and chromatin modification activities of a nucleosome-interacting surface in EZH2.

• Authors : Gail EH; Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Faculty of Medicine, Nursing and Health Sciences, Monash University, Clayton, Victoria, Australia.; Healy E

Subjects: Enhancer of Zeste Homolog 2 Protein*/Enhancer of Zeste Homolog 2 Protein*/Enhancer of Zeste Homolog 2 Protein*/metabolism ; Enhancer of Zeste Homolog 2 Protein*/Enhancer of Zeste Homolog 2 Protein*/Enhancer of Zeste Homolog 2 Protein*/genetics ; Nucleosomes*/Nucleosomes*/Nucleosomes*/metabolism

• Source: Nature genetics [Nat Genet] 2024 Jun; Vol. 56 (6), pp. 1193-1202. Date of Electronic Publication: 2024 May 14.Publisher: Nature Pub. Co Country of Publication: United States NLM ID: 9216904 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

Record details

Maintenance and dynamic reprogramming of chromatin organization during development.

• Authors : Simon L; iGReD, CNRS, Inserm, Université Clermont Auvergne, 63000, Clermont-Ferrand, France.; Probst AV

Subjects: Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/genetics ; Nucleosomes*/Nucleosomes*/Nucleosomes*/metabolism

• Source: The Plant journal : for cell and molecular biology [Plant J] 2024 May; Vol. 118 (3), pp. 657-670. Date of Electronic Publication: 2023 Feb 17.Publisher: Blackwell Scientific Publishers and BIOS Scientific Publishers in association with the Society for Experimental Biology Country of Publication: England NLM ID:

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Artificially inserted strong promoter containing multiple G-quadruplexes induces long-range chromatin modification.

• Authors : Roy SS; CSIR-Institute of Genomics and Integrative Biology, New Delhi, India.; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India.

Subjects: G-Quadruplexes* ; Promoter Regions, Genetic* ; Chromatin*/Chromatin*/Chromatin*/metabolism

• Source: ELife [Elife] 2024 Aug 19; Vol. 13. Date of Electronic Publication: 2024 Aug 19.Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet

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A chromatin code for limb segment identity in axolotl limb regeneration.

• Authors : Kawaguchi A; Research Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), 1030 Vienna, Austria.; Wang J

Subjects: Regeneration*/Regeneration*/Regeneration*/genetics ; Regeneration*/Regeneration*/Regeneration*/physiology ; Extremities*

• Source: Developmental cell [Dev Cell] 2024 Aug 19; Vol. 59 (16), pp. 2239-2253.e9. Date of Electronic Publication: 2024 May 23.Publisher: Cell Press Country of Publication: United States NLM ID: 101120028 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Chrom-seq identifies RNAs at chromatin marks.

• Authors : Fan L; Ministry of Education Key Laboratory of Resource Biology and Biotechnology in Western China; Shaanxi Provincial Key Laboratory of Biotechnology

Subjects: Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/genetics ; Histones*/Histones*/Histones*/metabolism

• Source: Science advances [Sci Adv] 2024 Aug 02; Vol. 10 (31), pp. eadn1397. Date of Electronic Publication: 2024 Jul 31.Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 101653440 Publication Model: Print-Electronic

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Chromatin state and BACH2 control T H 17 cell functional heterogeneity.

Subjects: Th17 Cells*/Th17 Cells*/Th17 Cells*/immunology ; Chromatin*/Chromatin*/Chromatin*/metabolism ; Basic-Leucine Zipper Transcription Factors*/Basic-Leucine Zipper Transcription Factors*/Basic-Leucine Zipper Transcription Factors*/metabolism

• Source: Nature immunology [Nat Immunol] 2024 Aug; Vol. 25 (8), pp. 1330-1331.Publisher: Nature America Inc Country of Publication: United States NLM ID: 100941354 Publication Model: Print Cited Medium: Internet ISSN:

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BACH2 regulates diversification of regulatory and proinflammatory chromatin states in T H 17 cells.

• Authors : Thakore PI; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Genentech, South San Francisco, CA, USA.

Subjects: Th17 Cells*/Th17 Cells*/Th17 Cells*/immunology ; Th17 Cells*/Th17 Cells*/Th17 Cells*/metabolism ; Basic-Leucine Zipper Transcription Factors*/Basic-Leucine Zipper Transcription Factors*/Basic-Leucine Zipper Transcription Factors*/metabolism

• Source: Nature immunology [Nat Immunol] 2024 Aug; Vol. 25 (8), pp. 1395-1410. Date of Electronic Publication: 2024 Jul 15.Publisher: Nature America Inc Country of Publication: United States NLM ID: 100941354 Publication Model: Print-Electronic Cited Medium: Internet

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Evaluation of the gene fusion landscape in early onset sporadic rectal cancer reveals association with chromatin architecture and genome stability.

• Authors : Gupta A; Laboratory of Molecular Oncology, Centre for DNA Fingerprinting and Diagnostics, Hyderabad, India.; Avadhanula S

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Rectal Neoplasms*/Rectal Neoplasms*/Rectal Neoplasms*/genetics ; Rectal Neoplasms*/Rectal Neoplasms*/Rectal Neoplasms*/pathology

• Source: Oncogene [Oncogene] 2024 Aug; Vol. 43 (32), pp. 2449-2462. Date of Electronic Publication: 2024 Jun 27.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 8711562 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Chromatin as an old and new anticancer target.

• Authors : Neefjes J; Department of Cell and Chemical Biology and Oncode Institute, LUMC, Einthovenweg 20, 2333, ZC, Leiden, The Netherlands.; Gurova K

Subjects: Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/drug effects ; Neoplasms*/Neoplasms*/Neoplasms*/drug therapy

• Source: Trends in cancer [Trends Cancer] 2024 Aug; Vol. 10 (8), pp. 696-707. Date of Electronic Publication: 2024 Jun 01.Publisher: Cell Press Country of Publication: United States NLM ID: 101665956 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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guidedNOMe-seq quantifies chromatin states at single allele resolution for hundreds of custom regions in parallel.

• Authors : Schwaiger M; Friedrich Miescher Institute for Biomedical Research, Basel, 4056, Switzerland.; Swiss Institute of Bioinformatics, Basel, 4056, Switzerland.

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromatin*/Chromatin*/Chromatin*/metabolism ; Alleles*

• Source: BMC genomics [BMC Genomics] 2024 Jul 29; Vol. 25 (1), pp. 732. Date of Electronic Publication: 2024 Jul 29.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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