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Academic Journal

SLIVER: Unveiling large scale gene regulatory networks of single-cell transcriptomic data through causal structure learning and modules aggregation.

  • Authors : Jiang H; School of Artificial Intelligence, Jilin University, Changchun, 130012, China.; Wang Y

Subjects: Gene Regulatory Networks* ; Algorithms* ; Transcriptome*

  • Source: Computers in biology and medicine [Comput Biol Med] 2024 Aug; Vol. 178, pp. 108690. Date of Electronic Publication: 2024 Jun 09.Publisher: Elsevier Country of Publication: United States NLM ID: 1250250 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Systematic mapping of organism-scale gene-regulatory networks in aging using population asynchrony.

  • Authors : Eder M; Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain.; Martin OMF

Subjects: Caenorhabditis elegans*/Caenorhabditis elegans*/Caenorhabditis elegans*/genetics ; Caenorhabditis elegans*/Caenorhabditis elegans*/Caenorhabditis elegans*/physiology ; Aging*/Aging*/Aging*/genetics

  • Source: Cell [Cell] 2024 Jul 25; Vol. 187 (15), pp. 3919-3935.e19. Date of Electronic Publication: 2024 Jun 21.Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data.

  • Authors : Loers JU; Lab for Computational Biology, Integromics and Gene Regulation (CBIGR), Cancer Research Institute Ghent (CRIG), Corneel Heymanslaan 10, 9000 Ghent, Belgium.; Department of Biomedical Molecular Biology, Ghent University, Zwijnaarde-Technologiepark 71, 9052 Ghent, Belgium.

Subjects: Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/genetics ; Single-Cell Analysis*/Single-Cell Analysis*/Single-Cell Analysis*/methods

  • Source: Briefings in bioinformatics [Brief Bioinform] 2024 Jul 25; Vol. 25 (5).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Exploring the transcriptomic landscape of moyamoya disease and systemic lupus erythematosus: insights into crosstalk genes and immune relationships.

  • Authors : Guo Q; Medical School of Chinese PLA, Beijing, China.; Department of Neurosurgery, The First Medical Centre, Chinese PLA General Hospital, Beijing, China.

Subjects: Moyamoya Disease*/Moyamoya Disease*/Moyamoya Disease*/genetics ; Moyamoya Disease*/Moyamoya Disease*/Moyamoya Disease*/immunology ; Lupus Erythematosus, Systemic*/Lupus Erythematosus, Systemic*/Lupus Erythematosus, Systemic*/genetics

  • Source: Frontiers in immunology [Front Immunol] 2024 Sep 03; Vol. 15, pp. 1456392. Date of Electronic Publication: 2024 Sep 03 (Print Publication: 2024).Publisher: Frontiers Research Foundation] Country of Publication: Switzerland NLM ID: 101560960 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Exploration and validation of ceRNA regulatory networks in colorectal cancer based on associations whole transcriptome sequencing.

  • Authors : Zhang L; Medical research center, Shaoxing People's Hospital, No. 568, Zhongxing North Road, Shaoxing, 312000, Zhejiang, China.; Li Y

Subjects: Colorectal Neoplasms*/Colorectal Neoplasms*/Colorectal Neoplasms*/genetics ; Gene Regulatory Networks* ; Gene Expression Regulation, Neoplastic*

  • Source: Scientific reports [Sci Rep] 2024 Sep 02; Vol. 14 (1), pp. 20446. Date of Electronic Publication: 2024 Sep 02.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Comparative transcriptome and coexpression network analysis revealed the regulatory mechanism of Astragalus cicer L. in response to salt stress.

  • Authors : Zhang Y; College of Grassland Science, Gansu Agricultural University, Lanzhou, 730070, China.; Key Laboratory of Grassland Ecosystem (Gansu Agricultural University), Ministry of Education, Lanzhou, 730070, China.

Subjects: Salt Stress*/Salt Stress*/Salt Stress*/genetics ; Transcriptome* ; Gene Regulatory Networks*

  • Source: BMC plant biology [BMC Plant Biol] 2024 Aug 30; Vol. 24 (1), pp. 817. Date of Electronic Publication: 2024 Aug 30.Publisher: BioMed Central Country of Publication: England NLM ID: 100967807 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2229

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Academic Journal

Transcriptomic Module Discovery of Diarrhea-Predominant Irritable Bowel Syndrome: A Causal Network Inference Approach.

  • Authors : Guido D; Data Science Unit, National Institute of Gastroenterology-IRCCS 'Saverio de Bellis', 70013 Castellana Grotte, Bari, Italy.; Maqoud F

Subjects: Irritable Bowel Syndrome*/Irritable Bowel Syndrome*/Irritable Bowel Syndrome*/genetics ; Irritable Bowel Syndrome*/Irritable Bowel Syndrome*/Irritable Bowel Syndrome*/metabolism ; Diarrhea*/Diarrhea*/Diarrhea*/genetics

  • Source: International journal of molecular sciences [Int J Mol Sci] 2024 Aug 28; Vol. 25 (17). Date of Electronic Publication: 2024 Aug 28.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

Transcriptome data are insufficient to control false discoveries in regulatory network inference.

  • Authors : Kernfeld E; Department of Biomedical Engineering, Johns Hopkins University, 3400 N. Charles Street, Wyman Park Building, Suite 400 West, Baltimore, MD 21218, USA.; Keener R

Subjects: Gene Regulatory Networks*/Gene Regulatory Networks*/Gene Regulatory Networks*/genetics ; Transcriptome*/Transcriptome*/Transcriptome*/genetics; Humans

  • Source: Cell systems [Cell Syst] 2024 Aug 21; Vol. 15 (8), pp. 709-724.e13.Publisher: Cell Press Country of Publication: United States NLM ID: 101656080 Publication Model: Print Cited Medium: Internet ISSN: 2405-4720

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Academic Journal

Global transcriptomic network analysis of the crosstalk between microbiota and cancer-related cells in the oral-gut-lung axis.

Subjects: Gene Expression Profiling* ; Transcriptome* ; Gene Regulatory Networks*

  • Source: Frontiers in cellular and infection microbiology [Front Cell Infect Microbiol] 2024 Aug 20; Vol. 14, pp. 1425388. Date of Electronic Publication: 2024 Aug 20 (Print Publication:Publisher: Frontiers Media SA Country of Publication: Switzerland NLM ID: 101585359 Publication Model: eCollection Cited Medium: Internet ISSN:

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Academic Journal

Transcriptome Profiles Reveal Key Regulatory Networks during Single and Multifactorial Stresses Coupled with Melatonin Treatment in Pitaya ( Selenicereus undatus L.).

  • Authors : Khokhar AA; Hainan Yazhou-Bay Seed Laboratory, School of Breeding and Multiplication, Hainan University, Sanya 572025, China.; Collaborative Innovation Center of Nanfan and High-Efficiency Tropical Agriculture, School of Tropical Crops and Forestry, Hainan University, Haikou 570228, China.

Subjects: Melatonin*/Melatonin*/Melatonin*/pharmacology ; Gene Expression Regulation, Plant*/Gene Expression Regulation, Plant*/Gene Expression Regulation, Plant*/drug effects ; Stress, Physiological*/Stress, Physiological*/Stress, Physiological*/genetics dragon fruit cactus

  • Source: International journal of molecular sciences [Int J Mol Sci] 2024 Aug 15; Vol. 25 (16). Date of Electronic Publication: 2024 Aug 15.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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  • 1-10 of  4,123 results for ""GENE regulatory networks""