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Academic Journal

Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types.

  • Authors : Funk CC; Institute for Systems Biology, Seattle, WA 98109, USA.; Casella AM

Subjects: Binding Sites/Binding Sites/Binding Sites/*genetics ; Deoxyribonucleases/Deoxyribonucleases/Deoxyribonucleases/*metabolism ; Genomics/Genomics/Genomics/*methods

  • Source: Cell reports [Cell Rep] 2020 Aug 18; Vol. 32 (7), pp. 108029.Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print Cited Medium: Internet ISSN: 2211-1247

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Academic Journal

Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape.

  • Authors : Sherwood RI; Division of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115.; Hashimoto T

Subjects: Models, Genetic*; Binding Sites/Binding Sites/Binding Sites/*genetics ; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: Nature biotechnology [Nat Biotechnol] 2014 Feb; Vol. 32 (2), pp. 171-178. Date of Electronic Publication: 2014 Jan 19.Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet

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Academic Journal

Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.

  • Authors : Fendrych M; Department of Plant Systems Biology, VIB, 9052 Ghent, Belgium; Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium.

Subjects: Arabidopsis/Arabidopsis/Arabidopsis/*growth & development ; Arabidopsis Proteins/Arabidopsis Proteins/Arabidopsis Proteins/*genetics ; Arabidopsis Proteins/Arabidopsis Proteins/Arabidopsis Proteins/*metabolism

  • Source: Current biology : CB [Curr Biol] 2014 May 05; Vol. 24 (9), pp. 931-40. Date of Electronic Publication: 2014 Apr 10.Publisher: Cell Press Country of Publication: England NLM ID: 9107782 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0445

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Academic Journal

TALE: a tale of genome editing.

  • Authors : Zhang M; Department of Medical Genetics, College of Basic Medical Science, Third Military Medical University, Chongqing 400038, People's Republic of China; Battalion 16 of Cadet Brigade, Third Military Medical University, Chongqing 400038, People's Republic of China. Electronic address: .

Subjects: Deoxyribonucleases/Deoxyribonucleases/Deoxyribonucleases/*metabolism ; Genetic Engineering/Genetic Engineering/Genetic Engineering/*methods ; Transcription Factors/Transcription Factors/Transcription Factors/*metabolism

  • Source: Progress in biophysics and molecular biology [Prog Biophys Mol Biol] 2014 Jan; Vol. 114 (1), pp. 25-32. Date of Electronic Publication: 2013 Nov 27.Publisher: Pergamon Press Country of Publication: England NLM ID: 0401233 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Generation and genetic engineering of human induced pluripotent stem cells using designed zinc finger nucleases.

  • Authors : Ramalingam S; Department of Environmental Health Sciences, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland 21205, USA.; London V

Subjects: Cell Dedifferentiation* ; Deoxyribonucleases*/Deoxyribonucleases*/Deoxyribonucleases*/biosynthesis ; Deoxyribonucleases*/Deoxyribonucleases*/Deoxyribonucleases*/genetics

  • Source: Stem cells and development [Stem Cells Dev] 2013 Feb 15; Vol. 22 (4), pp. 595-610. Date of Electronic Publication: 2012 Oct 19.Publisher: Mary Ann Liebert, Inc Country of Publication: United States NLM ID: 101197107 Publication Model: Print-Electronic Cited Medium: Internet

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Academic Journal

Directed evolution of the TALE N-terminal domain for recognition of all 5' bases.

  • Authors : Lamb BM; The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037 USA, Department of Cell and Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037 USA and Department of Chemistry, The Scripps Research Institute, La Jolla, CA 92037 USA.; Mercer AC

Subjects: DNA-Binding Proteins/DNA-Binding Proteins/DNA-Binding Proteins/*chemistry ; Deoxyribonucleases/Deoxyribonucleases/Deoxyribonucleases/*chemistry ; Recombinases/Recombinases/Recombinases/*chemistry

  • Source: Nucleic acids research [Nucleic Acids Res] 2013 Nov; Vol. 41 (21), pp. 9779-85. Date of Electronic Publication: 2013 Aug 26.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

NAC transcription factor ORE1 and senescence-induced BIFUNCTIONAL NUCLEASE1 (BFN1) constitute a regulatory cascade in Arabidopsis.

  • Authors : Matallana-Ramirez LP; University of Potsdam, Institute of Biochemistry and Biology, Karl-Liebknecht-Straβe 24-25, 14476 Potsdam-Golm, Germany.; Rauf M

Subjects: Arabidopsis/Arabidopsis/Arabidopsis/*growth & development ; Arabidopsis/Arabidopsis/Arabidopsis/*metabolism ; Arabidopsis Proteins/Arabidopsis Proteins/Arabidopsis Proteins/*metabolism

  • Source: Molecular plant [Mol Plant] 2013 Sep; Vol. 6 (5), pp. 1438-52. Date of Electronic Publication: 2013 Jan 22.Publisher: Cell Press Country of Publication: England NLM ID: 101465514 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Engineering customized TALE nucleases (TALENs) and TALE transcription factors by fast ligation-based automatable solid-phase high-throughput (FLASH) assembly.

  • Authors : Reyon D; Molecular Pathology Unit, Center for Computational and Integrative Biology, Massachusetts General Hospital, Charlestown, Massachusetts, USA.; Maeder ML

Subjects: Deoxyribonucleases/Deoxyribonucleases/Deoxyribonucleases/*genetics ; Gene Targeting/Gene Targeting/Gene Targeting/*methods ; Genetic Engineering/Genetic Engineering/Genetic Engineering/*methods

  • Source: Current protocols in molecular biology [Curr Protoc Mol Biol] 2013 Jul; Vol. Chapter 12, pp. Unit 12.16.Country of Publication: United States NLM ID: 8908160 Publication Model: Print Cited Medium: Internet ISSN: 1934-3647 (Electronic) Linking ISSN:

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Academic Journal

Role of stem cells in large animal genetic engineering in the TALENs-CRISPR era.

  • Authors : Park KE; Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20742, USA.; Telugu BP

Subjects: Animals, Genetically Modified* ; Cellular Reprogramming* ; Clustered Regularly Interspaced Short Palindromic Repeats*

  • Source: Reproduction, fertility, and development [Reprod Fertil Dev] 2013; Vol. 26 (1), pp. 65-73.Publisher: Commonwealth Scientific and Industrial Research Organisation Country of Publication: Australia NLM ID: 8907465 Publication Model: Print Cited

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Academic Journal

Editing livestock genomes with site-specific nucleases.

  • Authors : Carlson DF; Recombinetics Inc., St. Paul, MN 55104, USA.; Tan W

Subjects: Animals, Genetically Modified* ; Cellular Reprogramming* ; Genome*

  • Source: Reproduction, fertility, and development [Reprod Fertil Dev] 2013; Vol. 26 (1), pp. 74-82.Publisher: Commonwealth Scientific and Industrial Research Organisation Country of Publication: Australia NLM ID: 8907465 Publication Model: Print Cited

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