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Academic Journal

High-resolution and programmable RNA-IN and RNA-OUT genetic circuit in living mammalian cells.

  • Authors : Zhang M; MOE Key Laboratory of Bioinformatics, Center for Synthetic and System Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China.; Zhang X

Subjects: CRISPR-Cas Systems* ; RNA*/RNA*/RNA*/metabolism ; RNA*/RNA*/RNA*/genetics

  • Source: Nature communications [Nat Commun] 2024 Oct 10; Vol. 15 (1), pp. 8768. Date of Electronic Publication: 2024 Oct 10.Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Causal gene regulatory analysis with RNA velocity reveals an interplay between slow and fast transcription factors.

  • Authors : Singh R; Computer Science and Artificial Intelligence Laboratory, MIT, Cambridge, MA 02139, USA. Electronic address: .; Wu AP

Subjects: Transcription Factors*/Transcription Factors*/Transcription Factors*/genetics ; Transcription Factors*/Transcription Factors*/Transcription Factors*/metabolism ; Gene Regulatory Networks*/Gene Regulatory Networks*/Gene Regulatory Networks*/genetics

  • Source: Cell systems [Cell Syst] 2024 May 15; Vol. 15 (5), pp. 462-474.e5.Publisher: Cell Press Country of Publication: United States NLM ID: 101656080 Publication Model: Print Cited Medium: Internet ISSN: 2405-4720

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Academic Journal

A set-theoretic definition of cell types with an algebraic structure on gene regulatory networks and application in annotation of RNA-seq data.

  • Authors : Okano Y; Department of Physiology, Keio University School of Medicine, 35, Shinanomachi, Shinjuku-ku, Tokyo 160-8582, Japan.; Kase Y

Subjects: RNA*/RNA*/RNA*/genetics ; Gene Regulatory Networks*; RNA-Seq

  • Source: Stem cell reports [Stem Cell Reports] 2023 Jan 10; Vol. 18 (1), pp. 113-130. Date of Electronic Publication: 2022 Nov 17.Publisher: Cell Press Country of Publication: United States NLM ID: 101611300 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Editorial & Opinion

RNA Regulatory Networks 2.0.

  • Authors : Enguita FJ; Instituto de Medicina Molecular João Lobo Antunes, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028 Lisboa, Portugal.; Leitão AL

Subjects: RNA*/RNA*/RNA*/genetics ; Gene Regulatory Networks*

  • Source: International journal of molecular sciences [Int J Mol Sci] 2023 May 19; Vol. 24 (10). Date of Electronic Publication: 2023 May 19.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

Sensing intracellular signatures with synthetic mRNAs.

  • Authors : Ono H; Department of Life Science Frontiers, Center for iPS Cell Research and Application, Kyoto University, Kyoto, Sakyo-Ku, Japan.; Saito H

Subjects: RNA*/RNA*/RNA*/genetics ; Gene Regulatory Networks*; RNA, Messenger/RNA, Messenger/RNA, Messenger/genetics

  • Source: RNA biology [RNA Biol] 2023 Jan; Vol. 20 (1), pp. 588-602.Publisher: Taylor & Francis Country of Publication: United States NLM ID: 101235328 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

GRNdb: decoding the gene regulatory networks in diverse human and mouse conditions.

  • Authors : Fang L; Center for Bioinformatics and Computational Biology, and Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences, School of Life Sciences, East China Normal University, Shanghai 200241, China.; Li Y

Subjects: Databases, Genetic* ; Gene Regulatory Networks*; Neoplasms/Neoplasms/Neoplasms/*genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D97-D103.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Generating transcriptional regulatory networks from time-ordered stem cell differentiation RNA sequencing data.

  • Authors : Tsai YS; Center for Systems and Synthetic Biology, National Yang Ming Chiao Tung University, Taipei, Taiwan.; Chang YM

Subjects: Gene Regulatory Networks*/Gene Regulatory Networks*/Gene Regulatory Networks*/genetics ; RNA*; Cell Differentiation/Cell Differentiation/Cell Differentiation/genetics

  • Source: STAR protocols [STAR Protoc] 2022 Aug 19; Vol. 3 (3), pp. 101541. Date of Electronic Publication: 2022 Aug 19 (Print Publication: 2022).Publisher: Cell Press Country of Publication: United States NLM ID: 101769501 Publication Model: eCollection Cited Medium: Internet ISSN:

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Academic Journal

Dynamical Systems Model of RNA Velocity Improves Inference of Single-cell Trajectory, Pseudo-time and Gene Regulation.

  • Authors : Liu R; Department of Electrical Engineering, Stanford University, Stanford, CA, USA.; Pisco AO

Subjects: Gene Expression Regulation* ; Gene Regulatory Networks* ; RNA*/RNA*/RNA*/genetics

  • Source: Journal of molecular biology [J Mol Biol] 2022 Aug 15; Vol. 434 (15), pp. 167606. Date of Electronic Publication: 2022 Apr 27.Publisher: Elsevier Country of Publication: Netherlands NLM ID: 2985088R Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

RNA Compensation: A Positive Feedback Insulation Strategy for RNA-Based Transcription Networks.

  • Authors : Liu B; Graduate Program in Systems, Synthetic, and Physical Biology, Rice University, Houston, Texas 77005, United States.; Cuba Samaniego C

Subjects: Gene Regulatory Networks*/Gene Regulatory Networks*/Gene Regulatory Networks*/genetics ; RNA*/RNA*/RNA*/genetics; Feedback

  • Source: ACS synthetic biology [ACS Synth Biol] 2022 Mar 18; Vol. 11 (3), pp. 1240-1250. Date of Electronic Publication: 2022 Mar 04.Publisher: American Chemical Society Country of Publication: United States NLM ID: 101575075 Publication Model: Print-Electronic Cited Medium: Internet

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Academic Journal

Comprehensive Analysis of CRIP1 in Patients with Ovarian Cancer, including ceRNA Network, Immune-Infiltration Pattern, and Clinical Benefit.

  • Authors : Qi B; Department III of Gynecology, Cangzhou Central Hospital, Cangzhou, China.; Liu S

Subjects: Gene Regulatory Networks*; Carrier Proteins/Carrier Proteins/Carrier Proteins/*genetics ; LIM Domain Proteins/LIM Domain Proteins/LIM Domain Proteins/*genetics

  • Source: Disease markers [Dis Markers] 2022 Jan 31; Vol. 2022, pp. 2687867. Date of Electronic Publication: 2022 Jan 31 (Print Publication: 2022).Publisher: Hindawi Pub. Corp Country of Publication: United States NLM ID: 8604127 Publication Model: eCollection Cited Medium: Internet ISSN:

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  • 1-10 of  1,734 results for ""GENE regulatory networks""