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InpactorDB: A Classified Lineage-Level Plant LTR Retrotransposon Reference Library for Free-Alignment Methods Based on Machine Learning.

• Authors : Orozco-Arias S; Department of Computer Science, Universidad Autónoma de Manizales, 170002 Manizales, Colombia.; Department of Systems and Informatics, Universidad de Caldas, 170002 Manizales, Colombia.

Subjects: Databases, Nucleic Acid* ; Genome, Plant* ; Retroelements*

• Source: Genes [Genes (Basel)] 2021 Jan 28; Vol. 12 (2). Date of Electronic Publication: 2021 Jan 28.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425

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LtrDetector: A tool-suite for detecting long terminal repeat retrotransposons de-novo.

• Authors : Valencia JD; The Bioinformatics Toolsmith Laboratory, Tandy School of Computer Science, University of Tulsa, 800 South Tucker Drive, Tulsa, 74104, OK, USA.; Girgis HZ

Subjects: Genome, Plant* ; Retroelements* ; Software*

• Source: BMC genomics [BMC Genomics] 2019 Jun 03; Vol. 20 (1), pp. 450. Date of Electronic Publication: 2019 Jun 03.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons.

• Authors : Ou S; Department of Horticulture, Michigan State University, East Lansing, Michigan 48824.; Jiang N

Subjects: Retroelements* ; Software* ; Terminal Repeat Sequences*

• Source: Plant physiology [Plant Physiol] 2018 Feb; Vol. 176 (2), pp. 1410-1422. Date of Electronic Publication: 2017 Dec 12.Publisher: American Society of Plant Biologists Country of Publication: United States NLM ID: 0401224 Publication Model: Print-Electronic Cited Medium:

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Rapid and Recent Evolution of LTR Retrotransposons Drives Rice Genome Evolution During the Speciation of AA-Genome Oryza Species.

• Authors : Zhang QJ; Plant Germplasm and Genomics Center, Kunming Institute of Botany, the Chinese Academy of Sciences, Kunming 650204 China.; University of the Chinese Academy of Sciences, Beijing 100039, China.

Subjects: Evolution, Molecular* ; Genome, Plant* ; Genomics*/Genomics*/Genomics*/methods

• Source: G3 (Bethesda, Md.) [G3 (Bethesda)] 2017 Jun 07; Vol. 7 (6), pp. 1875-1885. Date of Electronic Publication: 2017 Jun 07.Publisher: Oxford University Press Country of Publication: England NLM ID: 101566598 Publication Model: Electronic Cited Medium: Internet ISSN:

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LTR-TEs abundance, timing and mobility in Solanum commersonii and S. tuberosum genomes following cold-stress conditions.

• Authors : Esposito S; Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy.; Barteri F

Subjects: Genomics*; Genome, Plant/Genome, Plant/Genome, Plant/*genetics ; Retroelements/Retroelements/Retroelements/*ethics

• Source: Planta [Planta] 2019 Nov; Vol. 250 (5), pp. 1781-1787. Date of Electronic Publication: 2019 Sep 27.Publisher: Springer-Verlag [etc.] Country of Publication: Germany NLM ID: 1250576 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Agricola

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Genome-wide analysis of LTR-retrotransposon diversity and its impact on the evolution of the genus Helianthus (L.).

• Authors : Mascagni F; Department of Agriculture, Food and Environment, University of Pisa, 56124, Pisa, Italy.; Giordani T

Subjects: Evolution, Molecular* ; Genetic Variation* ; Genomics*

• Source: BMC genomics [BMC Genomics] 2017 Aug 18; Vol. 18 (1), pp. 634. Date of Electronic Publication: 2017 Aug 18.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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GREM, a technique for genome-wide isolation and quantitative analysis of promoter active repeats.

• Authors : Buzdin A; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, 16/10 Miklukho-Maklaya, Moscow 117997, Russia. ; Kovalskaya-Alexandrova E

Subjects: Promoter Regions, Genetic* ; Terminal Repeat Sequences*; Endogenous Retroviruses/Endogenous Retroviruses/Endogenous Retroviruses/*genetics

• Source: Nucleic acids research [Nucleic Acids Res] 2006 May 12; Vol. 34 (9), pp. e67. Date of Electronic Publication: 2006 May 12.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Electronic Cited Medium: Internet ISSN:

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Detection and classification of long terminal repeat sequences in plant LTR-retrotransposons and their analysis using explainable machine learning.

• Authors : Horvath, Jakub; Jedlicka, Pavel; Kratka, Marie

• Source: BioData Mining. December 18, 2024, Vol. 17 Issue 1.

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Mammalian-specific genomic functions: Newly acquired traits generated by genomic imprinting and LTR retrotransposon-derived genes in mammals.

• Authors : Kaneko-Ishino T; School of Health Sciences, Tokai University.; Ishino F

Subjects: Genomic Imprinting/Genomic Imprinting/Genomic Imprinting/*genetics ; Genomics/Genomics/Genomics/*methods ; Mammals/Mammals/Mammals/*genetics

• Source: Proceedings of the Japan Academy. Series B, Physical and biological sciences [Proc Jpn Acad Ser B Phys Biol Sci] 2015; Vol. 91 (10), pp. 511-38.Publisher: Japan Academy Country of Publication: Japan NLM ID: 9318162 Publication Model: Print Cited Medium: Internet ISSN: 1349-2896

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