Search Results

A Comprehensive Guide to Quality Assessment and Data Submission for Genomic Surveillance of Enteric Pathogens.

• Authors : Timme RE; Center for Food Safety & Applied Nutrition, U.S. Food & Drug Administration, College Park, MD, USA. .; Pfefer T

Subjects: Quality Control* ; Genomics*/Genomics*/Genomics*/methods ; Genomics*/Genomics*/Genomics*/standards

• Source: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2025; Vol. 2852, pp. 199-209.Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029

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qc3C: Reference-free quality control for Hi-C sequencing data.

• Authors : DeMaere MZ; The iThree Institute, University of Technology Sydney, Ultimo, NSW, Australia.; Darling AE

Subjects: Chromosome Mapping*/Chromosome Mapping*/Chromosome Mapping*/methods ; Chromosome Mapping*/Chromosome Mapping*/Chromosome Mapping*/standards ; Genomics*/Genomics*/Genomics*/methods

• Source: PLoS computational biology [PLoS Comput Biol] 2021 Oct 11; Vol. 17 (10), pp. e1008839. Date of Electronic Publication: 2021 Oct 11 (Print Publication: 2021).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Agricola

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MAQC and the era of genomic medicine.

• Authors : Salit M; Departments of Bioengineering and Pathology, Stanford University, Stanford, CA, USA. .; SLAC National Accelerator Laboratory, Menlo Park, CA, USA. .

Subjects: Genomics* ; Quality Control*; Humans

• Source: Nature biotechnology [Nat Biotechnol] 2021 Sep; Vol. 39 (9), pp. 1066-1067.Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print Cited Medium: Internet ISSN:

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Framework for quality assessment of whole genome cancer sequences.

• Authors : Whalley JP; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Carrer Baldiri i Reixac 4, 08028, Barcelona, Spain.; Wellcome Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford, UK.

Subjects: Quality Control*; Genome, Human/Genome, Human/Genome, Human/*genetics ; Genomics/Genomics/Genomics/*standards

• Source: Nature communications [Nat Commun] 2020 Oct 07; Vol. 11 (1), pp. 5040. Date of Electronic Publication: 2020 Oct 07.Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN:

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SAG-QC: quality control of single amplified genome information by subtracting non-target sequences based on sequence compositions.

• Authors : Maruyama T; Department of Life Science & Medical Bioscience, Graduate School of Advanced Science & Engineering, Waseda University, 3-4-1 Okubo, Shinjuku, Tokyo, 169-8555, Japan.; Computational Bio-Big Data Open Innovation Lab., National Institute of Advanced Science and Technology, 3-4-1 Okubo, Shinjuku, Tokyo, 169-0072, Japan.

Subjects: Genome, Bacterial* ; Quality Control*; Computational Biology/Computational Biology/Computational Biology/*methods

• Source: BMC bioinformatics [BMC Bioinformatics] 2017 Mar 04; Vol. 18 (1), pp. 152. Date of Electronic Publication: 2017 Mar 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets.

• Authors : Mendoza-Parra MA; Equipe Labellisée Ligue Contre le Cancer, Department of Functional Genomics and Cancer, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC)/CNRS/INSERM/Université de Strasbourg, BP 10142, 67404, Illkirch Cedex, France. .; Saleem MA

Subjects: Chromatin Immunoprecipitation*/Chromatin Immunoprecipitation*/Chromatin Immunoprecipitation*/methods ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; Quality Control*

• Source: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2016; Vol. 1418, pp. 243-65.Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029

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Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.

• Authors : Okonechnikov K; Department of Molecular Biology, Max Planck Institute for Infection Biology, D-10117, Berlin, Germany.; Conesa A

Subjects: Quality Control* ; Software*; Genomics/Genomics/Genomics/*methods

• Source: Bioinformatics (Oxford, England) [Bioinformatics] 2016 Jan 15; Vol. 32 (2), pp. 292-4. Date of Electronic Publication: 2015 Oct 01.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Measuring the reproducibility and quality of Hi-C data.

• Authors : Yardımcı GG; Department of Genome Sciences, University of Washington, Seattle, USA.; Ozadam H

Subjects: Quality Control* ; Software*; Genomics/Genomics/Genomics/*standards

• Source: Genome biology [Genome Biol] 2019 Mar 19; Vol. 20 (1), pp. 57. Date of Electronic Publication: 2019 Mar 19.Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN:

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Enhancing clinical genomic accuracy with panelGC: a novel metric and tool for quantifying and monitoring GC biases in hybridization capture panel sequencing.

• Authors : Cheng, Xuanjin¹ (AUTHOR); Goktas, Murathan T¹ (AUTHOR); Williamson, Laura M¹ (AUTHOR)

Subjects: *POLYMERASE chain reaction; *QUALITY control; *CLINICAL medicine

• Source: Briefings in Bioinformatics. Sep2024, Vol. 25 Issue 5, p1-9. 9p.

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