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Academic Journal

Haxe as a Swiss knife for bioinformatic applications: the SeqPHASE case story.

  • Authors : Spöri Y; Evolutionary Biology & Ecology, Université libre de Bruxelles (ULB), 1050 Brussels, Belgium.; Flot JF

Subjects: Computational Biology*/Computational Biology*/Computational Biology*/methods ; Programming Languages* ; Software*

  • Source: Briefings in bioinformatics [Brief Bioinform] 2024 Jul 25; Vol. 25 (5).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium:

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Academic Journal

Poincaré and SimBio: a versatile and extensible Python ecosystem for modeling systems.

  • Authors : Silberberg M; Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Física, Buenos Aires 1426, Argentina.; CONICET - Universidad de Buenos Aires, Instituto de Física de Buenos Aires (IFIBA), Buenos Aires 1426, Argentina.

Subjects: Software* ; Systems Biology*/Systems Biology*/Systems Biology*/methods ; Programming Languages*

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Aug 02; Vol. 40 (8).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

hopsy - a methods marketplace for convex polytope sampling in Python.

  • Authors : Paul RD; Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich, 52428 Jülich, Germany.; Institute of Advanced Simulations, IAS-8: Data Analytics and Machine Learning, Forschungszentrum Jülich, 52428 Jülich, Germany.

Subjects: Software* ; Algorithms* ; Programming Languages*

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jul 01; Vol. 40 (7).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

BioCoder: a benchmark for bioinformatics code generation with large language models.

  • Authors : Tang X; Department of Computer Science, Yale University, New Haven, CT 06520, United States.; Qian B

Subjects: Computational Biology*/Computational Biology*/Computational Biology*/methods ; Software* ; Benchmarking*/Benchmarking*/Benchmarking*/methods

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jun 28; Vol. 40 (Suppl 1), pp. i266-i276.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

vcfpp: a C++ API for rapid processing of the variant call format.

  • Authors : Li Z; Section for Computational and RNA Biology, University of Copenhagen, Copenhagen 2200, Denmark.

Subjects: Software* ; Programming Languages*; Big Data

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Feb 01; Vol. 40 (2).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

SimService: a lightweight library for building simulation services in Python.

  • Authors : Sego TJ; Department of Medicine, University of Florida, Gainesville, FL 32610-0225, United States.

Subjects: Software* ; Programming Languages*; Computer Simulation

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jan 02; Vol. 40 (1).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

An automated model annotation system (AMAS) for SBML models.

  • Authors : Shin W; Auckland Bioengineering Institute, University of Auckland, 1010 Auckland, New Zealand.; Gennari JH

Subjects: Systems Biology* ; Programming Languages*; Software

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2023 Nov 01; Vol. 39 (11).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

SBMLDiagrams: a python package to process and visualize SBML layout and render.

  • Authors : Xu J; Department of Bioengineering, University of Washington, Seattle, WA 98195, USA.; Jiang J

Subjects: Systems Biology* ; Programming Languages*; Software

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2023 Jan 01; Vol. 39 (1).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

SBML2HYB: a Python interface for SBML compatible hybrid modeling.

  • Authors : Pinto J; LAQV-REQUIMTE, Department of Chemistry, NOVA School of Science and Technology, Universidade NOVA de Lisboa, Caparica 2829-516, Portugal.; Costa RS

Subjects: Programming Languages* ; Systems Biology*/Systems Biology*/Systems Biology*/methods; Models, Biological

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2023 Jan 01; Vol. 39 (1).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

libRoadRunner 2.0: a high performance SBML simulation and analysis library.

  • Authors : Welsh C; Department of Bioengineering, University of Washington, Seattle, WA 98195, USA.; Xu J

Subjects: Programming Languages* ; Systems Biology*; Models, Biological

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2023 Jan 01; Vol. 39 (1).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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  • 1-10 of  1,120 results for ""Programming Languages""