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Academic Journal

Efficient protein structure archiving using ProteStAr.

  • Authors : Deorowicz S; Department of Algorithmics and Software, Silesian University of Technology, Akademicka 16, Gliwice, PL-44100, Poland.; Gudyś A

Subjects: Databases, Protein* ; Proteins*/Proteins*/Proteins*/chemistry ; Software*

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jul 01; Vol. 40 (7).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

RCSB protein Data Bank: exploring protein 3D similarities via comprehensive structural alignments.

  • Authors : Bittrich S; Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California, La Jolla, CA 92093, United States.; Segura J

Subjects: Databases, Protein* ; Proteins*/Proteins*/Proteins*/chemistry ; Software*

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jun 03; Vol. 40 (6).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

MoLPC2: improved prediction of large protein complex structures and stoichiometry using Monte Carlo Tree Search and AlphaFold2.

  • Authors : Chim HY; Science for Life Laboratory and Department of Biochemistry and Biophysics, Stockholm University, Stockholm 106 91, Sweden.; Elofsson A

Subjects: Monte Carlo Method* ; Algorithms* ; Software*

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jun 03; Vol. 40 (6).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

Fine-tuning protein embeddings for functional similarity evaluation.

  • Authors : Dickson A; Departments of Bioengineering and Mechanical Engineering, Molecular Cell Biomechanics Laboratory, University of California, Berkeley, CA 94720, United States.; Mofrad MRK

Subjects: Proteins*/Proteins*/Proteins*/chemistry; Algorithms ; Cluster Analysis

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Aug 02; Vol. 40 (8).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

A curated rotamer library for common post-translational modifications of proteins.

  • Authors : Zhang O; Kenneth S. Pitzer Center for Theoretical Chemistry, University of California, Berkeley, CA 94720, United States.; Naik SA

Subjects: Protein Processing, Post-Translational* ; Proteins*/Proteins*/Proteins*/chemistry ; Proteins*/Proteins*/Proteins*/metabolism

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jul 01; Vol. 40 (7).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

DualNetGO: a dual network model for protein function prediction via effective feature selection.

  • Authors : Chen Z; Data Science and Analytics Thrust, Information Hub, The Hong Kong University of Science and Technology (Guangzhou), Guangzhou, Guangdong, 511400, China.; Luo Q

Subjects: Proteins*/Proteins*/Proteins*/metabolism ; Proteins*/Proteins*/Proteins*/chemistry; Mice

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jul 01; Vol. 40 (7).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

Surface-based multimodal protein-ligand binding affinity prediction.

  • Authors : Xu S; National Institute for Data Science in Health and Medicine, Xiamen University, Xiamen 361005, China.; Shen L

Subjects: Proteins*/Proteins*/Proteins*/metabolism ; Proteins*/Proteins*/Proteins*/chemistry ; Protein Binding*

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jul 01; Vol. 40 (7).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

Predicting protein functions using positive-unlabeled ranking with ontology-based priors.

  • Authors : Zhapa-Camacho F; Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia.; Computer, Electrical and Mathematical Sciences & Engineering Division (CEMSE), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia.

Subjects: Proteins*/Proteins*/Proteins*/chemistry ; Proteins*/Proteins*/Proteins*/metabolism ; Computational Biology*/Computational Biology*/Computational Biology*/methods

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jun 28; Vol. 40 (Supplement_1), pp. i401-i409.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

FMCA-DTI: a fragment-oriented method based on a multihead cross attention mechanism to improve drug-target interaction prediction.

  • Authors : Zhang Q; College of Mathematics and Computer Science, Yan'an University, Yan'an 716000, China.; Zuo L

Subjects: Proteins*/Proteins*/Proteins*/metabolism ; Proteins*/Proteins*/Proteins*/chemistry; Drug Discovery/Drug Discovery/Drug Discovery/methods

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jun 03; Vol. 40 (6).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

Chainsaw: protein domain segmentation with fully convolutional neural networks.

  • Authors : Wells J; Centre for Artificial Intelligence, University College London, WC1E 6BT, United Kingdom.; Hawkins-Hooker A

Subjects: Neural Networks, Computer* ; Proteins*/Proteins*/Proteins*/chemistry ; Algorithms*

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 May 02; Vol. 40 (5).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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  • 1-10 of  1,388 results for ""Algorithms""