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The OGCleaner: filtering false-positive homology clusters.

• Authors : Fujimoto MS; Computer Science Department, Brigham Young University, Provo, UT 84602, USA.; Suvorov A

Subjects: Algorithms* ; Sequence Homology, Amino Acid*; Proteins/Proteins/Proteins/*chemistry

• Source: Bioinformatics (Oxford, England) [Bioinformatics] 2017 Jan 01; Vol. 33 (1), pp. 125-127. Date of Electronic Publication: 2016 Sep 10.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited

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Agricola

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MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts.

• Authors : Philipp M; Image and Signal Processing Group, Department of Computer Science, Leipzig University, Augustusplatz 10, 04109 Leipzig, Germany.; Moth CW

Subjects: Internet* ; Software* ; Mutation*

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W132-W139.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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The SBASE protein domain library, release 2.0: a collection of annotated protein sequence segments.

• Authors : Pongor S; International Centre for Genetic Engineering and Biotechnology, Area Science Park, Trieste, Italy.; Skerl V

Subjects: Databases, Factual* ; Protein Conformation* ; Sequence Homology, Amino Acid*

• Source: Nucleic acids research [Nucleic Acids Res] 1993 Jul 01; Vol. 21 (13), pp. 3111-5.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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ConSSeq: a web-based application for analysis of amino acid conservation based on HSSP database and within context of structure.

• Authors : Higa RH; Núcleo de Bioinformática, Centro Nacional de Pesquisa Agropecuária, Empresa Brasileira de Pesquisa Agropecuária, Campinas, SP, Brazil.; Montagner AJ

Subjects: Databases, Protein* ; Internet* ; Sequence Homology, Amino Acid*

• Source: Bioinformatics (Oxford, England) [Bioinformatics] 2004 Aug 12; Vol. 20 (12), pp. 1983-5. Date of Electronic Publication: 2004 Mar 25.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited

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The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.

• Authors : Kopp J; Biozentrum der Universität Basel and Swiss Institute of Bioinformatics, Klingelbergstrasse 50-70, CH 4056 Basel, Switzerland.; Schwede T

Subjects: Databases, Protein* ; Models, Molecular* ; Sequence Homology, Amino Acid*

• Source: Nucleic acids research [Nucleic Acids Res] 2004 Jan 01; Vol. 32 (Database issue), pp. D230-4.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues.

• Authors : Bray JE; Biomolecular Structure and Modelling Unit, Department of Biochemistry and Molecular Biology, University College London, Gower Street,London WC1E 6BT, UK. ; Todd AE

Subjects: Databases, Factual* ; Sequence Alignment* ; Sequence Homology, Amino Acid*

• Source: Protein engineering [Protein Eng] 2000 Mar; Vol. 13 (3), pp. 153-65.Publisher: Oxford University Press Country of Publication: England NLM ID: 8801484 Publication Model: Print Cited Medium:

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Frustraevo: a web server to localize and quantify the conservation of local energetic frustration in protein families.

• Authors : Parra RG; Computational Biology Group, Life Sciences Department, Barcelona Supercomputing Center, Barcelona, Spain.; Freiberger MI

Subjects: Software* ; Protein Folding* ; Internet*

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W233-W237.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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The Damietta Server: a comprehensive protein design toolkit.

• Authors : Grin I; Interfaculty Institute of Microbiology and Infection Medicine (IMIT), University of Tübingen, Tübingen, Germany.; Maksymenko K

Subjects: Software* ; Proteins*/Proteins*/Proteins*/chemistry ; Internet*

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W200-W206.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Deep learning for the PSIPRED Protein Analysis Workbench.

• Authors : Buchan DWA; UCL Bioinformatics Group, Department of Computer Science, University College London, London, WC1E 6BT, UK.; Moffat L

Subjects: Deep Learning* ; Software* ; Proteins*/Proteins*/Proteins*/chemistry

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W287-W293.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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