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GrAfSS: a webserver for substructure similarity searching and comparisons in the structures of proteins and RNA.

• Authors : Ghani NSA; Institute of Systems Biology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia.; Emrizal R

Subjects: Proteins*/Proteins*/Proteins*/chemistry ; RNA*/RNA*/RNA*/chemistry ; Software*

• Source: Nucleic acids research [Nucleic Acids Res] 2022 Jul 05; Vol. 50 (W1), pp. W375-W383.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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NCBRPred: predicting nucleic acid binding residues in proteins based on multilabel learning.

• Authors : Zhang J; Computer Science and Technology with Harbin Institute of Technology, Shenzhen, China.; Chen Q

Subjects: Software*; DNA/DNA/DNA/*chemistry ; Proteins/Proteins/Proteins/*chemistry

• Source: Briefings in bioinformatics [Brief Bioinform] 2021 Sep 02; Vol. 22 (5).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium:

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Agricola

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The CAD-score web server: contact area-based comparison of structures and interfaces of proteins, nucleic acids and their complexes.

• Authors : Olechnovič K; Institute of Biotechnology, Vilnius University, Graičiūno 8, Vilnius LT-02241, Lithuania Faculty of Mathematics and Informatics, Vilnius University, Naugarduko 24, Vilnius LT-03225, Lithuania.; Venclovas C

Subjects: Software*; DNA/DNA/DNA/*chemistry ; Proteins/Proteins/Proteins/*chemistry

• Source: Nucleic acids research [Nucleic Acids Res] 2014 Jul; Vol. 42 (Web Server issue), pp. W259-63. Date of Electronic Publication: 2014 May 16.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited

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KOSMOS: a universal morph server for nucleic acids, proteins and their complexes.

• Authors : Seo S; Department of Nano Science and Technology and School of Mechanical Engineering, Sungkyunkwan University, 300, Cheoncheon-dong, Jangan-gu, Suwon 440-746, Korea.; Kim MK

Subjects: Software*; DNA/DNA/DNA/*chemistry ; Proteins/Proteins/Proteins/*chemistry

• Source: Nucleic acids research [Nucleic Acids Res] 2012 Jul; Vol. 40 (Web Server issue), pp. W531-6. Date of Electronic Publication: 2012 Jun 04.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited

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Quantifying the impact of dependent evolution among sites in phylogenetic inference.

• Authors : Nasrallah CA; Department of Integrative Biology, University of California, Berkeley, 3060 Valley Life Sciences Building #3140, Berkeley, CA 94720-3140, USA. ; Mathews DH

Subjects: Evolution, Molecular* ; Models, Genetic* ; Phylogeny*

• Source: Systematic biology [Syst Biol] 2011 Jan; Vol. 60 (1), pp. 60-73. Date of Electronic Publication: 2010 Nov 15.Publisher: Oxford University Press Country of Publication: England NLM ID: 9302532 Publication Model: Print-Electronic Cited

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MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts.

• Authors : Philipp M; Image and Signal Processing Group, Department of Computer Science, Leipzig University, Augustusplatz 10, 04109 Leipzig, Germany.; Moth CW

Subjects: Internet* ; Software* ; Mutation*

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W132-W139.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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RNABindR: a server for analyzing and predicting RNA-binding sites in proteins.

• Authors : Terribilini M; Department of Genetics, Development & Cell Biology, Bioinformatics & Computational Biology Program, Iowa State University, Ames, Iowa 50011, USA.; Sander JD

Subjects: Internet*; Amino Acids/Amino Acids/Amino Acids/*chemistry ; Computational Biology/Computational Biology/Computational Biology/*methods

• Source: Nucleic acids research [Nucleic Acids Res] 2007 Jul; Vol. 35 (Web Server issue), pp. W578-84. Date of Electronic Publication: 2007 May 05.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited

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Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures.

• Authors : Morozova N; Department of Biochemistry and Cell Biology, Rice University 6100 Main Street, Houston, TX 77005, USA.; Allers J

Subjects: Computational Biology/Computational Biology/Computational Biology/*methods ; Proteins/Proteins/Proteins/*chemistry ; RNA/RNA/RNA/*chemistry

• Source: Bioinformatics (Oxford, England) [Bioinformatics] 2006 Nov 15; Vol. 22 (22), pp. 2746-52. Date of Electronic Publication: 2006 Sep 11.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited

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Frustraevo: a web server to localize and quantify the conservation of local energetic frustration in protein families.

• Authors : Parra RG; Computational Biology Group, Life Sciences Department, Barcelona Supercomputing Center, Barcelona, Spain.; Freiberger MI

Subjects: Software* ; Protein Folding* ; Internet*

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W233-W237.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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