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Academic Journal

MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts.

  • Authors : Philipp M; Image and Signal Processing Group, Department of Computer Science, Leipzig University, Augustusplatz 10, 04109 Leipzig, Germany.; Moth CW

Subjects: Internet* ; Software* ; Mutation*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W132-W139.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

pyconsFold: a fast and easy tool for modeling and docking using distance predictions.

  • Authors : Lamb J; Science for Life Laboratory, Stockholm University, Solna SE-171 21, Sweden.; Department of Biochemistry and Biophysics, Stockholm University, Stockholm SE-106 91, Sweden.

Subjects: Proteins*/Proteins*/Proteins*/chemistry ; Software* ; Protein Conformation*

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2021 Nov 05; Vol. 37 (21), pp. 3959-3960.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

Improving protein fold recognition using triplet network and ensemble deep learning.

  • Authors : Liu Y; School of Computer Science and Engineering, Nanjing University of Science and Technology, 200 Xiaolingwei, Nanjing 210094, China.; Han K

Subjects: Deep Learning* ; Models, Molecular* ; Protein Conformation*

  • Source: Briefings in bioinformatics [Brief Bioinform] 2021 Nov 05; Vol. 22 (6).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium:

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Academic Journal

Amino Acid Interactions (INTAA) web server v2.0: a single service for computation of energetics and conservation in biomolecular 3D structures.

  • Authors : Vymětal J; Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Praha 6, 160 00, Czech Republic.; Jakubec D

Subjects: Protein Conformation* ; Software*; Amino Acids/Amino Acids/Amino Acids/*chemistry

  • Source: Nucleic acids research [Nucleic Acids Res] 2021 Jul 02; Vol. 49 (W1), pp. W15-W20.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

ModFOLD8: accurate global and local quality estimates for 3D protein models.

  • Authors : McGuffin LJ; School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, UK.; Aldowsari FMF

Subjects: Computers* ; Models, Molecular* ; Neural Networks, Computer*

  • Source: Nucleic acids research [Nucleic Acids Res] 2021 Jul 02; Vol. 49 (W1), pp. W425-W430.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

ReFOLD3: refinement of 3D protein models with gradual restraints based on predicted local quality and residue contacts.

  • Authors : Adiyaman R; School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, UK.; McGuffin LJ

Subjects: Computers* ; Internet* ; Models, Molecular*

  • Source: Nucleic acids research [Nucleic Acids Res] 2021 Jul 02; Vol. 49 (W1), pp. W589-W596.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

ProteinTools: a toolkit to analyze protein structures.

  • Authors : Ferruz N; Department of Biochemistry, University of Bayreuth, 95447 Bayreuth, Germany.; Schmidt S

Subjects: Protein Conformation* ; Software*; Proteins/Proteins/Proteins/*chemistry

  • Source: Nucleic acids research [Nucleic Acids Res] 2021 Jul 02; Vol. 49 (W1), pp. W559-W566.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

ResiRole: residue-level functional site predictions to gauge the accuracies of protein structure prediction techniques.

  • Authors : Toth JM; Department of Medical Education, Geisinger Commonwealth School of Medicine, Scranton, PA 18510, USA.; DePietro PJ

Subjects: Computers* ; Protein Conformation* ; Proteins*

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2021 Apr 20; Vol. 37 (3), pp. 351-359.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Academic Journal

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.

  • Authors : Burley SK; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.

Subjects: Databases, Protein* ; Protein Conformation*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D437-D451.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

Frequency and hydrogen bonding of nucleobase homopairs in small molecule crystals.

  • Authors : Cabaj MK; Biological and Chemical Research Centre, Department of Chemistry, University of Warsaw, ul. Żwirki i Wigury 101, 02-089 Warszawa, Poland.; Dominiak PM

Subjects: Databases, Protein* ; Hydrogen Bonding* ; Protein Conformation*

  • Source: Nucleic acids research [Nucleic Acids Res] 2020 Sep 04; Vol. 48 (15), pp. 8302-8319.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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  • 1-10 of  1,547 results for ""Protein Conformation""