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Surface-based multimodal protein-ligand binding affinity prediction.

• Authors : Xu S; National Institute for Data Science in Health and Medicine, Xiamen University, Xiamen 361005, China.; Shen L

Subjects: Proteins*/Proteins*/Proteins*/metabolism ; Proteins*/Proteins*/Proteins*/chemistry ; Protein Binding*

• Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jul 01; Vol. 40 (7).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Cost function network-based design of protein-protein interactions: predicting changes in binding affinity.

• Authors : Viricel C; Laboratoire d'Ingénierie des Systèmes Biologiques et des Procédés, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France.; Unité de Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet Tolosan cedex, France.

Subjects: Artificial Intelligence* ; Mutation* ; Protein Binding*

• Source: Bioinformatics (Oxford, England) [Bioinformatics] 2018 Aug 01; Vol. 34 (15), pp. 2581-2589.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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Agricola

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Refinement of protein cores and protein-peptide interfaces using a potential scaling approach.

• Authors : Riemann RN; International University Bremen, School of Engineering and Science, D-28759 Bremen, Germany.; Zacharias M

Subjects: Protein Binding* ; Protein Conformation*; Proteins/Proteins/Proteins/*chemistry

• Source: Protein engineering, design & selection : PEDS [Protein Eng Des Sel] 2005 Oct; Vol. 18 (10), pp. 465-76. Date of Publisher: Oxford University Press Country of Publication: England NLM ID: 101186484 Publication Model: Print-Electronic

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Side-chain rotamer changes upon ligand binding: common, crucial, correlate with entropy and rearrange hydrogen bonding.

• Authors : Gaudreault F; Department of Biochemistry, Université de Sherbrooke, 3001, Québec, Canada J1H 5N4.; Chartier M

Subjects: Protein Binding*; Amino Acids/Amino Acids/Amino Acids/*chemistry ; Proteins/Proteins/Proteins/*chemistry

• Source: Bioinformatics (Oxford, England) [Bioinformatics] 2012 Sep 15; Vol. 28 (18), pp. i423-i430.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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A machine learning approach to predicting protein-ligand binding affinity with applications to molecular docking.

• Authors : Ballester PJ; Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge, UK. ; Mitchell JB

Subjects: Artificial Intelligence* ; Protein Binding*; Computational Biology/Computational Biology/Computational Biology/*methods

• Source: Bioinformatics (Oxford, England) [Bioinformatics] 2010 May 01; Vol. 26 (9), pp. 1169-75. Date of Electronic Publication: 2010 Mar 17.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited

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MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts.

• Authors : Philipp M; Image and Signal Processing Group, Department of Computer Science, Leipzig University, Augustusplatz 10, 04109 Leipzig, Germany.; Moth CW

Subjects: Internet* ; Software* ; Mutation*

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W132-W139.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Long-distance potentials: an approach to the multiple-minima problem in ligand-receptor interaction.

• Authors : Vakser IA; Center for Molecular Design, Washington University, St Louis, MO 63130, USA.

Subjects: Ligands* ; Protein Binding* ; Protein Conformation*

• Source: Protein engineering [Protein Eng] 1996 Jan; Vol. 9 (1), pp. 37-41.Publisher: Oxford University Press Country of Publication: England NLM ID: 8801484 Publication Model: Print Cited Medium:

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ClusPro: an automated docking and discrimination method for the prediction of protein complexes.

• Authors : Comeau SR; Bioinformatics Graduate Program and Department, Boston University, 44 Cummington St, Boston, MA 02215, USA.; Gatchell DW

Subjects: Algorithms* ; Cluster Analysis* ; Models, Chemical*

• Source: Bioinformatics (Oxford, England) [Bioinformatics] 2004 Jan 01; Vol. 20 (1), pp. 45-50.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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RankViaContact: ranking and visualization of amino acid contacts.

• Authors : Shen B; Institute of Medical Technology, University of Tampere, FIN-33014 and Research Unit, Tampere University Hospital, FIN-33520 Tampere, Finland.; Vihinen M

Subjects: Models, Chemical* ; Models, Molecular* ; Protein Binding*

• Source: Bioinformatics (Oxford, England) [Bioinformatics] 2003 Nov 01; Vol. 19 (16), pp. 2161-2.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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