Search Results

PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution.

• Authors : Rey J; Université Paris Cité, CNRS UMR 8251, INSERM U1133, RPBS, Paris, France.; Murail S

Subjects: Peptides*/Peptides*/Peptides*/chemistry ; Proteins*/Proteins*/Proteins*/chemistry ; Software*

• Source: Nucleic acids research [Nucleic Acids Res] 2023 Jul 05; Vol. 51 (W1), pp. W432-W437.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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UNRES-Dock-protein-protein and peptide-protein docking by coarse-grained replica-exchange MD simulations.

• Authors : Krupa P; Faculty of Chemistry, University of Gdańsk, Gdańsk 80-308, Poland.; Institute of Physics, Polish Academy of Sciences, Warsaw 02-668, Poland.

Subjects: Peptides* ; Proteins*; Molecular Docking Simulation

• Source: Bioinformatics (Oxford, England) [Bioinformatics] 2021 Jul 12; Vol. 37 (11), pp. 1613-1615.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences.

• Authors : Chen Z; School of Basic Medical Science, Qingdao University, 38 Dengzhou Road, Qingdao, China.; Zhao P

Subjects: Molecular Sequence Annotation* ; Software*; Peptides/Peptides/Peptides/*metabolism

• Source: Bioinformatics (Oxford, England) [Bioinformatics] 2018 Jul 15; Vol. 34 (14), pp. 2499-2502.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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The pepATTRACT web server for blind, large-scale peptide-protein docking.

• Authors : de Vries SJ; INSERM UMR-S 973/Université Paris Diderot/Sorbonne Paris Cité/RPBS, Paris 75205, France.; Rey J

Subjects: Software*; Molecular Docking Simulation/Molecular Docking Simulation/Molecular Docking Simulation/*methods ; Peptides/Peptides/Peptides/*chemistry

• Source: Nucleic acids research [Nucleic Acids Res] 2017 Jul 03; Vol. 45 (W1), pp. W361-W364.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Agricola

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PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex.

• Authors : Lamiable A; Molécules Thérapeutiques in Silico, RPBS, INSERM UMR-S 973, Université Paris Diderot, Sorbonne Paris Cité, 75205 Paris Cedex 13, France.; Thévenet P

Subjects: Software*; Peptides/Peptides/Peptides/*chemistry ; Proteins/Proteins/Proteins/*chemistry

• Source: Nucleic acids research [Nucleic Acids Res] 2016 Jul 08; Vol. 44 (W1), pp. W449-54. Date of Electronic Publication: 2016 Apr 29.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited

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protr/ProtrWeb: R package and web server for generating various numerical representation schemes of protein sequences.

• Authors : Xiao N; School of Mathematics and Statistics and School of Pharmaceutical Sciences, Central South University, Changsha 410083, People's Republic of China.; Cao DS

Subjects: Software*; Peptides/Peptides/Peptides/*chemistry ; Proteins/Proteins/Proteins/*chemistry

• Source: Bioinformatics (Oxford, England) [Bioinformatics] 2015 Jun 01; Vol. 31 (11), pp. 1857-9. Date of Electronic Publication: 2015 Jan 24.Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited

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PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces.

• Authors : Saladin A; INSERM U973, MTi, F-75205 Paris, France Université Paris Diderot, Sorbonne Paris Cité, F-75205 Paris, France.; Rey J

Subjects: Software*; Molecular Docking Simulation/Molecular Docking Simulation/Molecular Docking Simulation/*methods ; Peptides/Peptides/Peptides/*chemistry

• Source: Nucleic acids research [Nucleic Acids Res] 2014 Jul; Vol. 42 (Web Server issue), pp. W221-6. Date of Electronic Publication: 2014 May 06.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited

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In vitro affinity screening of protein and peptide binders by megavalent bead surface display.

• Authors : Diamante L; Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, CB2 1GA Cambridge, UK.; Gatti-Lafranconi P

Subjects: Microspheres*; Cell Surface Display Techniques/Cell Surface Display Techniques/Cell Surface Display Techniques/*methods ; Peptides/Peptides/Peptides/*metabolism

• Source: Protein engineering, design & selection : PEDS [Protein Eng Des Sel] 2013 Oct; Vol. 26 (10), pp. 713-24. Date of Publisher: Oxford University Press Country of Publication: England NLM ID: 101186484 Publication Model: Print-Electronic

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A divide and conquer approach to fast loop modeling.

• Authors : Tosatto SC; Institute for Computational Medicine and Chair for Computer Science V, Universität Mannheim, B 6, 26, 68131 Mannheim, Germany.; Bindewald E

Subjects: Algorithms* ; Models, Molecular* ; Protein Conformation*

• Source: Protein engineering [Protein Eng] 2002 Apr; Vol. 15 (4), pp. 279-86.Publisher: Oxford University Press Country of Publication: England NLM ID: 8801484 Publication Model: Print Cited Medium:

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