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NCBRPred: predicting nucleic acid binding residues in proteins based on multilabel learning.

• Authors : Zhang J; Computer Science and Technology with Harbin Institute of Technology, Shenzhen, China.; Chen Q

Subjects: Software*; DNA/DNA/DNA/*chemistry ; Proteins/Proteins/Proteins/*chemistry

• Source: Briefings in bioinformatics [Brief Bioinform] 2021 Sep 02; Vol. 22 (5).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium:

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Allosterism and signal transfer in DNA.

• Authors : Balaceanu A; Joint IRB-BSC Program on Computational Biology, Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), 08028 Barcelona, Spain.; Pérez A

Subjects: Nucleic Acid Conformation* ; Protein Conformation*; DNA/DNA/DNA/*chemistry

• Source: Nucleic acids research [Nucleic Acids Res] 2018 Sep 06; Vol. 46 (15), pp. 7554-7565.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Agricola

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Changes in conformational dynamics of basic side chains upon protein-DNA association.

• Authors : Esadze A; Department of Biochemistry and Molecular Biology, Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch, Galveston, TX 77555-1068, USA.; Chen C

Subjects: Amino Acids, Basic/Amino Acids, Basic/Amino Acids, Basic/*metabolism ; DNA/DNA/DNA/*metabolism ; Proteins/Proteins/Proteins/*chemistry

• Source: Nucleic acids research [Nucleic Acids Res] 2016 Aug 19; Vol. 44 (14), pp. 6961-70. Date of Electronic Publication: 2016 Jun 10.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited

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The CAD-score web server: contact area-based comparison of structures and interfaces of proteins, nucleic acids and their complexes.

• Authors : Olechnovič K; Institute of Biotechnology, Vilnius University, Graičiūno 8, Vilnius LT-02241, Lithuania Faculty of Mathematics and Informatics, Vilnius University, Naugarduko 24, Vilnius LT-03225, Lithuania.; Venclovas C

Subjects: Software*; DNA/DNA/DNA/*chemistry ; Proteins/Proteins/Proteins/*chemistry

• Source: Nucleic acids research [Nucleic Acids Res] 2014 Jul; Vol. 42 (Web Server issue), pp. W259-63. Date of Electronic Publication: 2014 May 16.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited

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KOSMOS: a universal morph server for nucleic acids, proteins and their complexes.

• Authors : Seo S; Department of Nano Science and Technology and School of Mechanical Engineering, Sungkyunkwan University, 300, Cheoncheon-dong, Jangan-gu, Suwon 440-746, Korea.; Kim MK

Subjects: Software*; DNA/DNA/DNA/*chemistry ; Proteins/Proteins/Proteins/*chemistry

• Source: Nucleic acids research [Nucleic Acids Res] 2012 Jul; Vol. 40 (Web Server issue), pp. W531-6. Date of Electronic Publication: 2012 Jun 04.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited

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MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts.

• Authors : Philipp M; Image and Signal Processing Group, Department of Computer Science, Leipzig University, Augustusplatz 10, 04109 Leipzig, Germany.; Moth CW

Subjects: Internet* ; Software* ; Mutation*

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W132-W139.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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ProMateus--an open research approach to protein-binding sites analysis.

• Authors : Neuvirth H; School of Computer Science and Engineering, The Hebrew University Jerusalem, 91904, Israel.; Heinemann U

Subjects: Algorithms* ; Software*; Computational Biology/Computational Biology/Computational Biology/*methods

• Source: Nucleic acids research [Nucleic Acids Res] 2007 Jul; Vol. 35 (Web Server issue), pp. W543-8. Date of Electronic Publication: 2007 May 08.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited

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Skipping events impose repeated binding attempts: profound kinetic implications of protein-DNA conformational changes.

• Authors : Rogoulenko E; Department of Chemical and Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel.; Levy Y

Subjects: DNA*/DNA*/DNA*/metabolism ; DNA*/DNA*/DNA*/chemistry ; Protein Binding*

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 08; Vol. 52 (12), pp. 6763-6776.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Frustraevo: a web server to localize and quantify the conservation of local energetic frustration in protein families.

• Authors : Parra RG; Computational Biology Group, Life Sciences Department, Barcelona Supercomputing Center, Barcelona, Spain.; Freiberger MI

Subjects: Software* ; Protein Folding* ; Internet*

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W233-W237.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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