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Agricola

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The SBASE protein domain library, release 6.0: a collection of annotated protein sequence segments.

• Authors : Murvai J; International Centre for Genetic Engineering and Biotechnology, Area Science Park, 34012 Trieste, Italy.; Vlahovicek K

Subjects: Amino Acid Sequence* ; Databases, Factual* ; Protein Conformation*

• Source: Nucleic acids research [Nucleic Acids Res] 1999 Jan 01; Vol. 27 (1), pp. 257-9.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts.

• Authors : Philipp M; Image and Signal Processing Group, Department of Computer Science, Leipzig University, Augustusplatz 10, 04109 Leipzig, Germany.; Moth CW

Subjects: Internet* ; Software* ; Mutation*

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W132-W139.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Inclusion of nucleic acid contribution into assessment of protein 3d-1D compatibility and prediction of binding sites for nucleic acids.

• Authors : Fujii S; School of Pharmaceutical Sciences, University of Shizuoka, Japan.; Yamagata Y

Subjects: Amino Acid Sequence* ; DNA Glycosylases* ; Protein Conformation*

• Source: Nucleic acids symposium series [Nucleic Acids Symp Ser] 1997 (37), pp. 261-2.Publisher: Oxford University Press Country of Publication: England NLM ID: 8007206 Publication Model: Print Cited Medium:

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Chameleon sequences in the PDB.

• Authors : Mezei M; Department of Physiology and Biophysics, Mount Sinai School of Medicine, CUNY, New York, NY 10029, USA.

Subjects: Amino Acid Sequence* ; Protein Structure, Secondary*; Proteins/Proteins/Proteins/*chemistry

• Source: Protein engineering [Protein Eng] 1998 Jun; Vol. 11 (6), pp. 411-4.Publisher: Oxford University Press Country of Publication: England NLM ID: 8801484 Publication Model: Print Cited Medium:

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Frustraevo: a web server to localize and quantify the conservation of local energetic frustration in protein families.

• Authors : Parra RG; Computational Biology Group, Life Sciences Department, Barcelona Supercomputing Center, Barcelona, Spain.; Freiberger MI

Subjects: Software* ; Protein Folding* ; Internet*

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W233-W237.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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The Damietta Server: a comprehensive protein design toolkit.

• Authors : Grin I; Interfaculty Institute of Microbiology and Infection Medicine (IMIT), University of Tübingen, Tübingen, Germany.; Maksymenko K

Subjects: Software* ; Proteins*/Proteins*/Proteins*/chemistry ; Internet*

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W200-W206.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Deep learning for the PSIPRED Protein Analysis Workbench.

• Authors : Buchan DWA; UCL Bioinformatics Group, Department of Computer Science, University College London, London, WC1E 6BT, UK.; Moffat L

Subjects: Deep Learning* ; Software* ; Proteins*/Proteins*/Proteins*/chemistry

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W287-W293.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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GPSFun: geometry-aware protein sequence function predictions with language models.

• Authors : Yuan Q; School of Computer Science and Engineering, Sun Yat-sen University, Guangzhou, Guangdong 510000, China.; Tian C

Subjects: Software* ; Proteins*/Proteins*/Proteins*/chemistry ; Proteins*/Proteins*/Proteins*/metabolism

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W248-W255.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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A curated rotamer library for common post-translational modifications of proteins.

• Authors : Zhang O; Kenneth S. Pitzer Center for Theoretical Chemistry, University of California, Berkeley, CA 94720, United States.; Naik SA

Subjects: Protein Processing, Post-Translational* ; Proteins*/Proteins*/Proteins*/chemistry ; Proteins*/Proteins*/Proteins*/metabolism

• Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jul 01; Vol. 40 (7).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium:

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