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Academic Journal

Reinventing gene expression connectivity through regulatory and spatial structural empowerment via principal node aggregation graph neural network.

  • Authors : Yan F; Department of Public Health and Sciences, University of Miami, Miami, FL 33126, USA.; Department of Computer Science, University of South Carolina, Columbia, SC 29201, USA.

Subjects: Gene Regulatory Networks* ; Neural Networks, Computer*; Humans

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 22; Vol. 52 (13), pp. e60.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Gene knockout inference with variational graph autoencoder learning single-cell gene regulatory networks.

  • Authors : Yang Y; Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA.; Li G

Subjects: Gene Regulatory Networks* ; Single-Cell Analysis*; Animals

  • Source: Nucleic acids research [Nucleic Acids Res] 2023 Jul 21; Vol. 51 (13), pp. 6578-6592.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Leveraging chromatin state transitions for the identification of regulatory networks orchestrating heart regeneration.

  • Authors : Cordero J; Department of Cardiovascular Genomics and Epigenomics, European Center for Angioscience (ECAS), Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.; German Centre for Cardiovascular Research (DZHK), Partner Site Heidelberg/Mannheim, 69120 Heidelberg, Germany.

Subjects: Chromatin*/Chromatin*/Chromatin*/metabolism ; Chromatin*/Chromatin*/Chromatin*/genetics ; Gene Regulatory Networks*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 May 08; Vol. 52 (8), pp. 4215-4233.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

HetFCM: functional co-module discovery by heterogeneous network co-clustering.

  • Authors : Tan H; School of Software, Shandong University, Jinan 250101, Shandong, China.; Joint SDU-NTU Centre for Artificial Intelligence Research, Shandong University, Jinan 250101, Shandong, China.

Subjects: Breast Neoplasms*/Breast Neoplasms*/Breast Neoplasms*/genetics ; Cluster Analysis* ; Gene Regulatory Networks*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Feb 09; Vol. 52 (3), pp. e16.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Enhancing circuit stability under growth feedback with supplementary repressive regulation.

  • Authors : Stone A; School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ 85281, USA.; Rijal S

Subjects: Gene Regulatory Networks* ; Synthetic Biology*/Synthetic Biology*/Synthetic Biology*/methods; Computer Simulation

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Feb 09; Vol. 52 (3), pp. 1512-1521.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

The YAP1/TAZ-TEAD transcriptional network regulates gene expression at neuromuscular junctions in skeletal muscle fibers.

  • Authors : Gessler L; Institute of Biochemistry, Medical Faculty, Friedrich-Alexander-University of Erlangen-Nürnberg, 91054 Erlangen, Germany.; Huraskin D

Subjects: Gene Regulatory Networks* ; Transcription Factors*/Transcription Factors*/Transcription Factors*/genetics ; Transcription Factors*/Transcription Factors*/Transcription Factors*/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jan 25; Vol. 52 (2), pp. 600-624.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

TroR is the primary regulator of the iron homeostasis transcription network in the halophilic archaeon Haloferax volcanii.

Subjects: Bacterial Proteins*/Bacterial Proteins*/Bacterial Proteins*/metabolism ; Haloferax volcanii*/Haloferax volcanii*/Haloferax volcanii*/genetics ; Haloferax volcanii*/Haloferax volcanii*/Haloferax volcanii*/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jan 11; Vol. 52 (1), pp. 125-140.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

scGRN: a comprehensive single-cell gene regulatory network platform of human and mouse.

  • Authors : Huang X; The First Affiliated Hospital & MOE Key Lab of Rare Pediatric Diseases, Hengyang Medical School, University of South China, Hengyang, Hunan, 421001, China.; Hunan Provincial Key Laboratory of Multi-omics and Artificial Intelligence of Cardiovascular Diseases & College of Basic Medical Sciences, Hengyang Medical School, University of South China, Hengyang, Hunan, 421001, China.

Subjects: Gene Expression Profiling* ; Gene Regulatory Networks* ; Transcription Factors*/Transcription Factors*/Transcription Factors*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jan 05; Vol. 52 (D1), pp. D293-D303.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

PathDIP 5: improving coverage and making enrichment analysis more biologically meaningful.

  • Authors : Pastrello C; Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute, Toronto, Ontario M5T 0S8, Canada.; Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, Krembil Discovery Tower, Toronto, ON M5T 0S8, Canada.

Subjects: Databases, Factual* ; Gene Regulatory Networks*; Molecular Sequence Annotation

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jan 05; Vol. 52 (D1), pp. D663-D671.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Chromatin accessibility-based characterisation of brain gene regulatory networks in three distinct honey bee polyphenisms.

Subjects: Bees*/Bees*/Bees*/genetics ; Brain* ; Chromatin*/Chromatin*/Chromatin*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2022 Nov 11; Vol. 50 (20), pp. 11550-11562.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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  • 1-10 of  1,215 results for ""GENE regulatory networks""