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Publication : nucleic acids research Language : english Publisher : oxford university press Subject : albumins Subject : blood plasma Subject : proteins Subject : serum albumin Filter by : Subject

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Academic Journal

MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts.

Authors : Philipp M; Image and Signal Processing Group, Department of Computer Science, Leipzig University, Augustusplatz 10, 04109 Leipzig, Germany.; Moth CW

Subjects: Internet* ; Software* ; Mutation*

Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W132-W139.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

Frustraevo: a web server to localize and quantify the conservation of local energetic frustration in protein families.

Authors : Parra RG; Computational Biology Group, Life Sciences Department, Barcelona Supercomputing Center, Barcelona, Spain.; Freiberger MI

Subjects: Software* ; Protein Folding* ; Internet*

Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W233-W237.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

The Damietta Server: a comprehensive protein design toolkit.

Authors : Grin I; Interfaculty Institute of Microbiology and Infection Medicine (IMIT), University of Tübingen, Tübingen, Germany.; Maksymenko K

Subjects: Software* ; Proteins*/Proteins*/Proteins*/chemistry ; Internet*

Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W200-W206.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

Deep learning for the PSIPRED Protein Analysis Workbench.

Authors : Buchan DWA; UCL Bioinformatics Group, Department of Computer Science, University College London, London, WC1E 6BT, UK.; Moffat L

Subjects: Deep Learning* ; Software* ; Proteins*/Proteins*/Proteins*/chemistry

Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W287-W293.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

GPSFun: geometry-aware protein sequence function predictions with language models.

Authors : Yuan Q; School of Computer Science and Engineering, Sun Yat-sen University, Guangzhou, Guangdong 510000, China.; Tian C

Subjects: Software* ; Proteins*/Proteins*/Proteins*/chemistry ; Proteins*/Proteins*/Proteins*/metabolism

Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W248-W255.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era.

Authors : Špačková A; Department of Physical Chemistry, Faculty of Science, Palacký University, tř. 17. listopadu 12, 771 46 Olomouc, Czech Republic.; Vávra O

Subjects: Databases, Protein* ; Proteins*/Proteins*/Proteins*/chemistry ; Software*

Source: Nucleic acids research [Nucleic Acids Res] 2024 Jan 05; Vol. 52 (D1), pp. D413-D418.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

αCharges: partial atomic charges for AlphaFold structures in high quality.

Authors : Schindler O; CEITEC - Central European Institute of Technology, Masaryk University, 625 00 Brno, Czech Republic.; National Centre for Biomolecular Research, Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic.

Subjects: Software* ; Proteins*/Proteins*/Proteins*/chemistry ; Computational Biology*/Computational Biology*/Computational Biology*/instrumentation

Source: Nucleic acids research [Nucleic Acids Res] 2023 Jul 05; Vol. 51 (W1), pp. W11-W16.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers.

Authors : McGuffin LJ; School of Biological Sciences, University of Reading, Whiteknights, ReadingRG6 6EX, UK.; Edmunds NS

Subjects: Software* ; Proteins*/Proteins*/Proteins*/chemistry; Ligands

Source: Nucleic acids research [Nucleic Acids Res] 2023 Jul 05; Vol. 51 (W1), pp. W274-W280.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution.

Authors : Rey J; Université Paris Cité, CNRS UMR 8251, INSERM U1133, RPBS, Paris, France.; Murail S

Subjects: Peptides*/Peptides*/Peptides*/chemistry ; Proteins*/Proteins*/Proteins*/chemistry ; Software*

Source: Nucleic acids research [Nucleic Acids Res] 2023 Jul 05; Vol. 51 (W1), pp. W432-W437.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

FuzPred: a web server for the sequence-based prediction of the context-dependent binding modes of proteins.

Authors : Hatos A; Department of Biomedical Sciences, University of Padova, Padova, Italy.; Department of Oncology, Lausanne University Hospital, Lausanne 1011, Switzerland.

Subjects: Proteins*/Proteins*/Proteins*/chemistry ; Computers*; Protein Conformation

Source: Nucleic acids research [Nucleic Acids Res] 2023 Jul 05; Vol. 51 (W1), pp. W198-W206.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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