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Publication : briefings in bioinformatics

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Academic Journal

Self-supervised learning on millions of primary RNA sequences from 72 vertebrates improves sequence-based RNA splicing prediction.

Authors : Chen K; School of Computer Science and Engineering, Sun Yat-sen University, Guangzhou, China.; Zhou Y

Subjects: RNA Splicing* ; Vertebrates*/Vertebrates*/Vertebrates*/genetics; Animals

Source: Briefings in bioinformatics [Brief Bioinform] 2024 Mar 27; Vol. 25 (3).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Performance evaluation of computational methods for splice-disrupting variants and improving the performance using the machine learning-based framework.

Authors : Liu H; Division of Cardiology, Department of Internal Medicine, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology and Hubei Key Laboratory of Genetics and Molecular Mechanisms of Cardiological Disorders, Wuhan 430030, China.; Dai J

Subjects: Alternative Splicing* ; RNA Splicing*; Computational Biology/Computational Biology/Computational Biology/methods

Source: Briefings in bioinformatics [Brief Bioinform] 2022 Sep 20; Vol. 23 (5).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

TransRef enables accurate transcriptome assembly by redefining accurate neo-splicing graphs.

Authors : Yu T; Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, China.; Han R

Subjects: Algorithms* ; RNA Splicing* ; Transcriptome*

Source: Briefings in bioinformatics [Brief Bioinform] 2021 Nov 05; Vol. 22 (6).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Systematic evaluation of differential splicing tools for RNA-seq studies.

Authors : Mehmood A; Turku Bioscience Centre, University of Turku and Åbo Akademi University, Turku, Finland.; Department of Physiology, University of Turku, Turku, Finland.

Subjects: RNA Splicing* ; RNA-Seq* ; Sequence Analysis, RNA*/Sequence Analysis, RNA*/Sequence Analysis, RNA*/methods

Source: Briefings in bioinformatics [Brief Bioinform] 2020 Dec 01; Vol. 21 (6), pp. 2052-2065.Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Evaluating approaches to find exon chains based on long reads.

Authors : Kuosmanen A; Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, Helsinki, Finland.; Norri T

Subjects: Chromosomes, Human, Pair 2* ; Exons* ; RNA Splicing*

Source: Briefings in bioinformatics [Brief Bioinform] 2018 May 01; Vol. 19 (3), pp. 404-414.Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

usDSM: a novel method for deleterious synonymous mutation prediction using undersampling scheme.

Authors : Tang, Xi¹ (AUTHOR); Zhang, Tao² (AUTHOR); Cheng, Na³ (AUTHOR)

Subjects: *PROBLEM solving; *INTERNET servers; DEEP learning

Source: Briefings in Bioinformatics. Sep2021, Vol. 22 Issue 5, p1-10. 10p.

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Academic Journal

LncAS2Cancer: a comprehensive database for alternative splicing of lncRNAs across human cancers.

Authors : Deng, Yulan¹ (AUTHOR); Luo, Hao¹ (AUTHOR); Yang, Zhenyu¹ (AUTHOR)

Subjects: *DATABASES; RNA splicing; KNOTS & splices

Source: Briefings in Bioinformatics. May2021, Vol. 22 Issue 3, p1-10. 10p.

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Academic Journal

Upstream analysis of alternative splicing: a review of computational approaches to predict context-dependent splicing factors.

Authors : Carazo, Fernando (AUTHOR) ; Romero, Juan P (AUTHOR); Rubio, Angel (AUTHOR)

Subjects: RNA splicing; GENETIC engineering; RNA-binding proteins

Source: Briefings in Bioinformatics. Jul2019, p1358-1375. 18p.

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Academic Journal

CASH: a constructing comprehensive splice site method for detecting alternative splicing events.

Authors : Wu, Wenwu¹ ; Zong, Jie²; Wei, Ning³

Subjects: RNA splicing; RNA sequencing; EXONS (Genetics)

Source: Briefings in Bioinformatics. Sep2018, Vol. 19 Issue 5, p905-917. 13p.

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Academic Journal

A Hitchhiker's guide to RNA–RNA structure and interaction prediction tools.

Authors : Tieng, Francis Yew Fu; Abdullah-Zawawi, Muhammad-Redha; Shahri, Nur Alyaa Afifah Md

Subjects: GENETIC translation; NON-coding RNA; RIBOSOMAL RNA

Source: Briefings in Bioinformatics; Jan2024, Vol. 25 Issue 1, p1-37, 37p

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