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Academic Journal

Cut-C: cleavage under tethered nuclease for conformational capture.

  • Authors : Shimbo T; Department of Stem Cell Therapy Science, Graduate School of Medicine, Osaka University, Suita, Osaka, 5650871, Japan. .; Kawamura M

Subjects: Genomics*; Chromatin/Chromatin/Chromatin/*chemistry ; Chromatin/Chromatin/Chromatin/*metabolism

  • Source: BMC genomics [BMC Genomics] 2019 Jul 29; Vol. 20 (1), pp. 614. Date of Electronic Publication: 2019 Jul 29.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.

  • Authors : Zhu LJ; Department of Molecular, Cell and Cancer Biology, University of Massachusetts Medical School, Worcester, MA, USA. .; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA. .

Subjects: Databases, Genetic* ; Sequence Analysis, DNA* ; Software*

  • Source: BMC genomics [BMC Genomics] 2017 May 15; Vol. 18 (1), pp. 379. Date of Electronic Publication: 2017 May 15.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

Integrated RNA-seq and DNase-seq analyses identify phenotype-specific BMP4 signaling in breast cancer.

  • Authors : Ampuja M; BioMediTech, University of Tampere, Tampere, Finland. .; Fimlab Laboratories, Tampere, Finland. .

Subjects: Phenotype* ; Sequence Analysis, RNA* ; Signal Transduction*/Signal Transduction*/Signal Transduction*/drug effects

  • Source: BMC genomics [BMC Genomics] 2017 Jan 11; Vol. 18 (1), pp. 68. Date of Electronic Publication: 2017 Jan 11.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

Wellington-bootstrap: differential DNase-seq footprinting identifies cell-type determining transcription factors.

  • Authors : Piper J; Warwick Systems Biology Centre, University of Warwick, Coventry, CV4 7AL, UK.; Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, Institute of Biomedical Research, University of Birmingham, Birmingham, B15 2TT, UK.

Subjects: Binding Sites* ; DNA Footprinting*/DNA Footprinting*/DNA Footprinting*/methods ; High-Throughput Nucleotide Sequencing*

  • Source: BMC genomics [BMC Genomics] 2015 Nov 25; Vol. 16, pp. 1000. Date of Electronic Publication: 2015 Nov 25.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

Phylogenomic analysis of the GIY-YIG nuclease superfamily.

  • Authors : Dunin-Horkawicz S; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, Trojdena 4, 02-109 Warsaw, Poland. ; Feder M

Subjects: Phylogeny*; Deoxyribonucleases/Deoxyribonucleases/Deoxyribonucleases/*genetics ; Genomics/Genomics/Genomics/*methods

  • Source: BMC genomics [BMC Genomics] 2006 Apr 28; Vol. 7, pp. 98. Date of Electronic Publication: 2006 Apr 28.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

Construction of a high density SNP linkage map of kelp (Saccharina japonica) by sequencing Taq I site associated DNA and mapping of a sex determining locus.

  • Authors : Zhang N; Laboratory of Marine Genetics and Breeding, Ocean University of China, Qingdao, 266003, China. .; Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao, 266003, China. .

Subjects: Chromosome Mapping* ; Genetic Linkage* ; Polymorphism, Single Nucleotide*

  • Source: BMC genomics [BMC Genomics] 2015 Mar 15; Vol. 16, pp. 189. Date of Electronic Publication: 2015 Mar 15.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

SMRT sequencing of the Campylobacter coli BfR-CA-9557 genome sequence reveals unique methylation motifs.

  • Authors : Zautner AE; Institute for Medical Microbiology, University Medical Center Göttingen, Kreuzbergring 57, D-37075, Göttingen, Germany. .; Goldschmidt AM

Subjects: Genome, Bacterial*; Campylobacter coli/Campylobacter coli/Campylobacter coli/*genetics ; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/*methods

  • Source: BMC genomics [BMC Genomics] 2015 Dec 21; Vol. 16, pp. 1088. Date of Electronic Publication: 2015 Dec 21.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

Lifespan of restriction-modification systems critically affects avoidance of their recognition sites in host genomes.

  • Authors : Rusinov I; Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, 119992, Russia. .; Ershova A

Subjects: Inverted Repeat Sequences*; Deoxyribonucleases, Type II Site-Specific/Deoxyribonucleases, Type II Site-Specific/Deoxyribonucleases, Type II Site-Specific/*metabolism; DNA Methylation

  • Source: BMC genomics [BMC Genomics] 2015 Dec 21; Vol. 16, pp. 1084. Date of Electronic Publication: 2015 Dec 21.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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  • 1-10 of  25 results for ""DEOXYRIBONUCLEASES""