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Publication : bmc bioinformatics Subject : data analysis Subject : research

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Academic Journal

Selecting single cell clustering parameter values using subsampling-based robustness metrics.

Authors : Patterson-Cross RB; Spinal Circuits and Plasticity Unit, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, USA.; Levine AJ

Subjects: Benchmarking* ; Data Analysis* ; Leukocytes, Mononuclear*

Source: BMC bioinformatics [BMC Bioinformatics] 2021 Feb 01; Vol. 22 (1), pp. 39. Date of Electronic Publication: 2021 Feb 01.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

CytoPipeline and CytoPipelineGUI: a Bioconductor R package suite for building and visualizing automated pre-processing pipelines for flow cytometry data.

Authors : Hauchamps, Philippe; Bayat, Babak; Delandre, Simon

Subjects: FLOW cytometry; QUALITY control; DATA visualization

Source: BMC Bioinformatics; 2/20/2024, Vol. 25 Issue 1, p1-22, 22p

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Academic Journal

NOBLE – Flexible concept recognition for large-scale biomedical natural language processing.

Authors : Tseytlin, Eugene; Mitchell, Kevin; Legowski, Elizabeth

Subjects: NATURAL language processing; DATA analysis; DECISION support systems

Source: BMC Bioinformatics; 1/14/2016, Vol. 17, p1-15, 15p, 1 Color Photograph, 2 Diagrams, 8 Charts, 2 Graphs

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Academic Journal

Roastgsa: a comparison of rotation-based scores for gene set enrichment analysis.

Authors : Caballé-Mestres, Adrià; Berenguer-Llergo, Antoni; Stephan-Otto Attolini, Camille

Subjects: GENES; RNA sequencing; DATA analysis

Source: BMC Bioinformatics; 10/30/2023, Vol. 24 Issue 1, p1-14, 14p

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Academic Journal

CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.

Authors : Kondratenko, Yulia; Korobeynikov, Anton; Lapidus, Alla

Subjects: REAL numbers; PIPELINES; DNA nanotechnology

Source: BMC Bioinformatics; 7/24/2020 Supplement 12, Vol. 21, p1-7, 7p, 2 Charts

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Academic Journal

INFLECT: an R-package for cytometry cluster evaluation using marker modality.

Authors : Verhoeff, Jan; Abeln, Sanne; Garcia-Vallejo, Juan J.

Subjects: CYTOMETRY; HIERARCHICAL clustering (Cluster analysis); STATISTICAL power analysis

Source: BMC Bioinformatics; 11/16/2022 Supplement, Vol. 22 Issue 14, p1-15, 15p

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Academic Journal

Comparative analysis of metagenomic classifiers for long-read sequencing datasets.

Authors : Marić, Josip; Križanović, Krešimir; Riondet, Sylvain

Subjects: SHOTGUN sequencing; METAGENOMICS; GUT microbiome

Source: BMC Bioinformatics; 1/11/2024, Vol. 25 Issue 1, p1-26, 26p

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Academic Journal

A multi-view genomic data simulator.

Authors : Fratello, Michele; Serra, Angela; Fortino, Vittorio

Subjects: GENOMICS; MICRORNA; GENE expression

Source: BMC Bioinformatics; 2015, Vol. 16 Issue 1, p1-15, 15p, 2 Diagrams, 6 Charts, 3 Graphs

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Academic Journal

Supervised topological data analysis for MALDI mass spectrometry imaging applications.

Authors : Klaila, Gideon; Vutov, Vladimir; Stefanou, Anastasios

Subjects: MATRIX-assisted laser desorption-ionization; DATA analysis; RANDOM forest algorithms

Source: BMC Bioinformatics; 7/10/2023, Vol. 24 Issue 1, p1-22, 22p

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Academic Journal

Statistical methods and resources for biomarker discovery using metabolomics.

Authors : Anwardeen, Najeha R.; Diboun, Ilhame; Mokrab, Younes

Subjects: METABOLOMICS; ECOLOGICAL disturbances; BIOMARKERS

Source: BMC Bioinformatics; 6/15/2023, Vol. 23 Issue 6, p1-18, 18p

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