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Academic Journal

Genome-wide RNA-seq, DNA methylation and small RNA-seq analysis unraveled complex gene regulatory networks in psoriasis pathogenesis.

  • Authors : Laha S; Human Genetics Unit, Indian Statistical Institute, 203 B. T. Road, Kolkata, West Bengal 700108, India.; Das S

Subjects: Psoriasis*/Psoriasis*/Psoriasis*/genetics ; Psoriasis*/Psoriasis*/Psoriasis*/pathology ; DNA Methylation*

  • Source: Gene [Gene] 2025 Jan 15; Vol. 933, pp. 148903. Date of Electronic Publication: 2024 Sep 02.Publisher: Elsevier/North-Holland Country of Publication: Netherlands NLM ID: 7706761 Publication Model: Print-Electronic Cited Medium: Internet

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Academic Journal

Integration of bioinformatics and multi-layered experimental validation reveals novel functions of acetylation-related genes in intervertebral disc degeneration.

  • Authors : Zhu J; Department of Orthopedics, The Affiliated Huai'an Hospital of Xuzhou Medical University and The Second People's Hospital of Huai'an, Huai'an 223003, Jiangsu Province, China; Department of Orthopedics, The Affiliated Hospital of Xuzhou Medical University, Xuzhou 221006, Jiangsu Province, China.

Subjects: Intervertebral Disc Degeneration*/Intervertebral Disc Degeneration*/Intervertebral Disc Degeneration*/genetics ; Computational Biology*/Computational Biology*/Computational Biology*/methods ; Protein Interaction Maps*/Protein Interaction Maps*/Protein Interaction Maps*/genetics

  • Source: Gene [Gene] 2025 Jan 15; Vol. 933, pp. 148974. Date of Electronic Publication: 2024 Sep 28.Publisher: Elsevier/North-Holland Country of Publication: Netherlands NLM ID: 7706761 Publication Model: Print-Electronic Cited Medium: Internet

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Academic Journal

Molecular characterization of PANoptosis-related genes as novel signatures for peripheral nerve injury based on time-series transcriptome sequencing.

  • Authors : Dai Y; Department of Orthopedics, Huashan Hospital, Fudan University, Shanghai 200040, China.; Shao M

Subjects: Peripheral Nerve Injuries*/Peripheral Nerve Injuries*/Peripheral Nerve Injuries*/genetics ; Transcriptome* ; Necroptosis*/Necroptosis*/Necroptosis*/genetics

  • Source: Gene [Gene] 2025 Jan 15; Vol. 933, pp. 148995. Date of Electronic Publication: 2024 Oct 10.Publisher: Elsevier/North-Holland Country of Publication: Netherlands NLM ID: 7706761 Publication Model: Print-Electronic Cited Medium: Internet

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Academic Journal

Genome‑wide identification of circular RNAs and MAPKs reveals the regulatory networks in response to green peach aphid infestation in peach (Prunus persica).

  • Authors : Wang X; School of Horticulture Landscape Architecture, Henan Institute of Science and Technology, 453003, PR China; Henan Province Engineering Research Center of Horticultural Plant Resource Utilization and Germplasm Enhancement, Xinxiang, PR China. Electronic address: .

Subjects: RNA, Circular*/RNA, Circular*/RNA, Circular*/genetics ; Prunus persica*/Prunus persica*/Prunus persica*/genetics ; Prunus persica*/Prunus persica*/Prunus persica*/parasitology

  • Source: Gene [Gene] 2025 Jan 15; Vol. 933, pp. 148994. Date of Electronic Publication: 2024 Oct 11.Publisher: Elsevier/North-Holland Country of Publication: Netherlands NLM ID: 7706761 Publication Model: Print-Electronic Cited Medium: Internet

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Academic Journal

The construction and experimental verification of a 6-LncRNA model based on Lactic acid metabolism in the tumor microenvironment of Wilms tumor.

  • Authors : Ding C; Department of Pediatric Surgery, Qilu Hospital of Shandong University, Jinan, China. Electronic address: .; Li G

Subjects: RNA, Long Noncoding*/RNA, Long Noncoding*/RNA, Long Noncoding*/genetics ; RNA, Long Noncoding*/RNA, Long Noncoding*/RNA, Long Noncoding*/metabolism ; Wilms Tumor*/Wilms Tumor*/Wilms Tumor*/genetics

  • Source: Gene [Gene] 2025 Jan 10; Vol. 932, pp. 148898. Date of Electronic Publication: 2024 Aug 30.Publisher: Elsevier/North-Holland Country of Publication: Netherlands NLM ID: 7706761 Publication Model: Print-Electronic Cited Medium: Internet

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Academic Journal

Prediction of Enhancer-Gene Interactions Using Chromatin-Conformation Capture and Epigenome Data Using STARE.

  • Authors : Hecker D; Institute for Computational Genomic Medicine and Institute of Cardiovascular Regeneration, Goethe University Frankfurt am Main, Frankfurt, Germany.; Schulz MH

Subjects: Enhancer Elements, Genetic* ; Chromatin*/Chromatin*/Chromatin*/genetics ; Chromatin*/Chromatin*/Chromatin*/metabolism

  • Source: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2025; Vol. 2856, pp. 327-339.Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029

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Academic Journal

Experimental Framework for Assessing Mouse Retinal Regeneration Through Single-Cell RNA-Sequencing.

  • Authors : Hernández-Núñez I; John F Hardesty, MD Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, MO, USA.; Clark BS

Subjects: Single-Cell Analysis*/Single-Cell Analysis*/Single-Cell Analysis*/methods ; Retina*/Retina*/Retina*/metabolism ; Ependymoglial Cells*/Ependymoglial Cells*/Ependymoglial Cells*/metabolism

  • Source: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2025; Vol. 2848, pp. 117-134.Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029

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Academic Journal

Isolation and Characterization of Extracellular Vesicles to Activate Retina Regeneration.

  • Authors : Nelson HM; Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA.; Konar GJ

Subjects: Extracellular Vesicles*/Extracellular Vesicles*/Extracellular Vesicles*/metabolism ; Retina*/Retina*/Retina*/metabolism ; Retina*/Retina*/Retina*/cytology

  • Source: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2025; Vol. 2848, pp. 135-150.Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029

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Academic Journal

Automated In Vivo Phenotypic Screening Platform for Identifying Factors that Affect Cell Regeneration Kinetics.

  • Authors : Ceisel A; Department of Ophthalmology, Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, MD, USA.; Cellular and Molecular Medicine Program, Johns Hopkins University School of Medicine, Baltimore, MD, USA.

Subjects: Zebrafish*; Animals ; Retina/Retina/Retina/cytology

  • Source: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2025; Vol. 2848, pp. 217-247.Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029

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Academic Journal

Identification of mitophagy-related genes and analysis of immune infiltration in the astrocytes based on machine learning in the pathogenesis of major depressive disorder.

  • Authors : Lei L; Department of Anatomy, School of Chinese Medicine, Beijing University of Chinese Medicine, Beijing 102488, China.; Chen CY

Subjects: Depressive Disorder, Major*/Depressive Disorder, Major*/Depressive Disorder, Major*/genetics ; Depressive Disorder, Major*/Depressive Disorder, Major*/Depressive Disorder, Major*/immunology ; Machine Learning*

  • Source: Journal of affective disorders [J Affect Disord] 2025 Jan 01; Vol. 368, pp. 160-171. Date of Electronic Publication: 2024 Sep 14.Publisher: Elsevier/North-Holland Biomedical Press Country of Publication: Netherlands NLM ID: 7906073 Publication Model: Print-Electronic Cited Medium:

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