Analysis of the Rice Raffinose Synthase (OsRS) Gene Family and Haplotype Diversity.

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  • Additional Information
    • Source:
      Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE
    • Publication Information:
      Original Publication: Basel, Switzerland : MDPI, [2000-
    • Subject Terms:
      Oryza*/genetics ; Oryza*/enzymology ; Haplotypes* ; Phylogeny* ; Galactosyltransferases*/genetics ; Galactosyltransferases*/metabolism; Genetic Variation ; Gene Expression Regulation, Plant ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Multigene Family ; Stress, Physiological/genetics ; Promoter Regions, Genetic
    • Abstract:
      Based on the genome information of rice (Nipponbare), this study screened and identified six raffinose synthase (RS) genes and analyzed their physical and chemical properties, phylogenetic relationship, conserved domains, promoter cis-acting elements, and the function and genetic diversity of the gene-CDS-haplotype (gcHap). The results showed that these genes play key roles in abiotic stress response, such as OsRS5 , whose expression in leaves changed significantly under high salt, drought, ABA, and MeJA treatments. In addition, the OsRS genes showed significant genetic variations in different rice populations. The main gcHaps of most OsRS loci had significant effects on key agronomic traits, and the frequency of these alleles varied significantly among different rice populations and subspecies. These findings provide direction for studying the RS gene family in other crops.
    • References:
      Genes (Basel). 2023 Jun 26;14(7):. (PMID: 37510251)
      Nat Protoc. 2008;3(2):153-62. (PMID: 18274516)
      Nature. 2018 May;557(7703):43-49. (PMID: 29695866)
      Theor Appl Genet. 2003 Dec;108(1):131-40. (PMID: 13679990)
      Plant J. 2007 Jun;50(5):873-85. (PMID: 17470057)
      Genetics. 1992 Oct;132(2):619-33. (PMID: 1385266)
      Plant Cell Physiol. 2020 Feb 1;61(2):331-341. (PMID: 31638155)
      Bioinformatics. 2010 Feb 1;26(3):419-20. (PMID: 20080509)
      J Biol Chem. 2020 Jun 5;295(23):8064-8077. (PMID: 32366461)
      Curr Protoc Bioinformatics. 2020 Mar;69(1):e90. (PMID: 31851420)
      Biotechnol Lett. 2007 Apr;29(4):635-40. (PMID: 17206375)
      Nucleic Acids Res. 2002 Jan 1;30(1):325-7. (PMID: 11752327)
      Mol Plant. 2021 May 3;14(5):787-804. (PMID: 33578043)
      J Plant Physiol. 2012 Jul 1;169(10):965-70. (PMID: 22575056)
      Sci Rep. 2023 Jan 16;13(1):795. (PMID: 36646750)
      BMC Plant Biol. 2013 Dec 20;13:218. (PMID: 24354450)
      Nucleic Acids Res. 2016 Jul 8;44(W1):W242-5. (PMID: 27095192)
      Int J Mol Sci. 2022 Dec 22;24(1):. (PMID: 36613645)
      Int J Mol Sci. 2023 Jul 06;24(13):. (PMID: 37446364)
      Front Plant Sci. 2023 Aug 11;14:1236251. (PMID: 37636110)
      Methods Mol Biol. 2017;1533:1-31. (PMID: 27987162)
      J Plant Physiol. 2018 Nov;230:109-121. (PMID: 30368031)
      Int J Biol Macromol. 2023 Dec 31;253(Pt 6):127327. (PMID: 37820910)
      J Plant Physiol. 2012 Dec 15;169(18):1883-91. (PMID: 22985990)
      Mol Plant. 2020 Aug 3;13(8):1194-1202. (PMID: 32585190)
      Plant Biotechnol J. 2022 May;20(5):806-808. (PMID: 35218297)
      Nucleic Acids Res. 2015 Jul 1;43(W1):W39-49. (PMID: 25953851)
      Front Plant Sci. 2015 Aug 26;6:656. (PMID: 26379684)
      Genome Res. 2017 Jun;27(6):1029-1038. (PMID: 28385712)
      Int J Mol Sci. 2022 Aug 09;23(16):. (PMID: 36012101)
    • Grant Information:
      2023n06020013 This research was funded by the Key Research and Development Program of Anhui Province; 2023YFD1200900 the National Key Research and Development Program of China; 2022AH040126 the Scientific Research Plan Major Projects of Anhui Province; U21A20214 the National Natural Science Foundation of China; 2021d06050002 the Improved Varieties Joint Research (Rice) Project of Anhui Province (the 14th five-year plan), and the Science and Technology Major Project of Anhui Province
    • Contributed Indexing:
      Keywords: abiotic stress; agronomic traits; genetic diversity; gene–CDS–haplotype; raffinose synthase; rice
    • Accession Number:
      EC 2.4.1.82 (raffinose synthase)
      EC 2.4.1.- (Galactosyltransferases)
      0 (Plant Proteins)
    • Publication Date:
      Date Created: 20240928 Date Completed: 20240928 Latest Revision: 20241007
    • Publication Date:
      20241007
    • Accession Number:
      PMC11432550
    • Accession Number:
      10.3390/ijms25189815
    • Accession Number:
      39337301