Toward a Categorization of Virus-ncRNA Interactions in the World of RNA to Disentangle the Tiny Secrets of Dengue Virus.

Item request has been placed! ×
Item request cannot be made. ×
loading   Processing Request
  • Additional Information
    • Source:
      Publisher: MDPI Country of Publication: Switzerland NLM ID: 101509722 Publication Model: Electronic Cited Medium: Internet ISSN: 1999-4915 (Electronic) Linking ISSN: 19994915 NLM ISO Abbreviation: Viruses Subsets: MEDLINE
    • Publication Information:
      Original Publication: Basel, Switzerland : MDPI
    • Subject Terms:
    • Abstract:
      In recent years, the function of noncoding RNAs (ncRNAs) as regulatory molecules of cell physiology has begun to be better understood. Advances in viral molecular biology have shown that host ncRNAs, cellular factors, and virus-derived ncRNAs and their interplay are strongly disturbed during viral infections. Nevertheless, the folding of RNA virus genomes has also been identified as a critical factor in regulating canonical and non-canonical functions. Due to the influence of host ncRNAs and the structure of RNA viral genomes, complex molecular and cellular processes in infections are modulated. We propose three main categories to organize the current information about RNA-RNA interactions in some well-known human viruses. The first category shows examples of host ncRNAs associated with the immune response triggered in viral infections. Even though miRNAs introduce a standpoint, they are briefly presented to keep researchers moving forward in uncovering other RNAs. The second category outlines interactions between virus-host ncRNAs, while the third describes how the structure of the RNA viral genome serves as a scaffold for processing virus-derived RNAs. Our grouping may provide a comprehensive framework to classify ncRNA-host-cell interactions for emerging viruses and diseases. In this sense, we introduced them to organize DENV-host-cell interactions.
    • References:
      Mem Inst Oswaldo Cruz. 2017 Apr;112(4):281-291. (PMID: 28327787)
      Genes (Basel). 2018 Sep 05;9(9):. (PMID: 30189613)
      Narra J. 2021 Apr;1(1):e31. (PMID: 38449776)
      Front Cell Dev Biol. 2023 Jul 27;11:1229393. (PMID: 37576600)
      mBio. 2011 Nov 15;2(6):. (PMID: 22086488)
      Clin Microbiol Rev. 1990 Oct;3(4):376-96. (PMID: 2224837)
      Viruses. 2018 Aug 19;10(8):. (PMID: 30126238)
      J Virol. 2015 Mar;89(6):3430-7. (PMID: 25589642)
      PLoS Pathog. 2013;9(4):e1003294. (PMID: 23593004)
      Nucleic Acids Res. 2019 Apr 8;47(6):3013-3027. (PMID: 30788509)
      Biotechnol Genet Eng Rev. 2018 Apr;34(1):90-106. (PMID: 29865927)
      Front Immunol. 2020 Jan 23;10:3079. (PMID: 32038626)
      PLoS Negl Trop Dis. 2017 Oct 18;11(10):e0005981. (PMID: 29045406)
      Arch Virol. 2020 Apr;165(4):835-843. (PMID: 32025807)
      BMC Genomics. 2016 Aug 11;17(1):617. (PMID: 27515907)
      Viruses. 2016 Jun 02;8(6):. (PMID: 27271654)
      Viruses. 2017 Mar 13;9(3):. (PMID: 28335410)
      Mem Inst Oswaldo Cruz. 2016 Apr;111(4):233-40. (PMID: 27074252)
      Br J Hosp Med (Lond). 2016 Dec 2;77(12):704-707. (PMID: 27937012)
      PLoS Pathog. 2012 Sep;8(9):e1002937. (PMID: 23028330)
      Gene. 2023 Apr 20;861:147232. (PMID: 36736508)
      Curr Opin Virol. 2015 Jun;12:66-74. (PMID: 25884487)
      Science. 2004 Apr 30;304(5671):734-6. (PMID: 15118162)
      PLoS Negl Trop Dis. 2014 Aug 14;8(8):e3088. (PMID: 25122182)
      Theranostics. 2020 Jul 23;10(20):9407-9424. (PMID: 32802200)
      Virology. 2015 Feb;476:54-60. (PMID: 25528416)
      J Immunol. 2015 Sep 1;195(5):1921-6. (PMID: 26297791)
      Int J Mol Sci. 2020 Mar 27;21(7):. (PMID: 32230899)
      Science. 2007 Jun 8;316(5830):1484-8. (PMID: 17510325)
      EMBO J. 2019 Apr 15;38(8):. (PMID: 30872283)
      Int J Med Sci. 2016 Feb 18;13(3):195-205. (PMID: 26941580)
      Noncoding RNA. 2019 Jan 14;5(1):. (PMID: 30646609)
      Bioinformatics. 2014 Jul 1;30(13):1793-9. (PMID: 24590443)
      Cell. 2020 May 14;181(4):914-921.e10. (PMID: 32330414)
      PLoS Negl Trop Dis. 2016 Feb 25;10(2):e0004452. (PMID: 26914027)
      Nat Microbiol. 2018 Nov;3(11):1234-1242. (PMID: 30224800)
      Nucleic Acids Res. 2012 Mar;40(5):2210-23. (PMID: 22080551)
      Front Cell Dev Biol. 2020 Jun 03;8:409. (PMID: 32582699)
      J Ethnopharmacol. 2017 Feb 23;198:109-121. (PMID: 28052239)
      Microbes Infect. 2014 Nov;16(11):911-22. (PMID: 25181337)
      Science. 2016 Dec 2;354(6316):1148-1152. (PMID: 27934765)
      Virus Res. 2019 Jan 2;259:68-76. (PMID: 30367889)
      Life (Basel). 2021 Apr 14;11(4):. (PMID: 33919874)
      Cancers (Basel). 2021 May 19;13(10):. (PMID: 34069740)
      Biomed Pharmacother. 2024 Jan;170:115978. (PMID: 38056234)
      Cell Res. 2019 Apr;29(4):265-273. (PMID: 30814679)
      Viruses. 2021 Mar 03;13(3):. (PMID: 33802569)
      Curr Opin Microbiol. 2016 Aug;32:113-119. (PMID: 27288760)
      Front Bioinform. 2024 Jan 31;4:1293412. (PMID: 38357577)
      J Virol. 2013 Aug;87(16):8870-83. (PMID: 23741001)
      Sci Rep. 2016 Jul 04;6:29002. (PMID: 27373794)
      Virology. 2015 Apr;478:27-38. (PMID: 25705792)
      J Neuroinflammation. 2014 May 29;11:97. (PMID: 24885259)
      J Virol. 2013 May;87(10):5645-56. (PMID: 23468506)
      Int J Mol Sci. 2021 Feb 09;22(4):. (PMID: 33572313)
      Front Genet. 2018 Oct 02;9:439. (PMID: 30333857)
      Elife. 2019 Sep 20;8:. (PMID: 31538617)
      Mol Ther. 2013 Feb;21(2):368-79. (PMID: 23183536)
      Virology. 2017 Nov;511:30-39. (PMID: 28803142)
      Nucleic Acids Res. 2018 Mar 16;46(5):2573-2584. (PMID: 29294088)
      Semin Cell Dev Biol. 2021 Mar;111:126-134. (PMID: 32580911)
      Biomed Res Int. 2014;2014:436097. (PMID: 24800225)
      Nucleic Acids Res. 2016 May 19;44(9):4340-53. (PMID: 26984525)
      Viruses. 2017 Jun 06;9(6):. (PMID: 28587300)
      Front Immunol. 2019 Jul 19;10:1711. (PMID: 31379885)
      Int J Mol Sci. 2021 Apr 06;22(7):. (PMID: 33917562)
      iScience. 2019 Jun 28;16:94-105. (PMID: 31154208)
      J Virol. 2014 Apr;88(7):3733-43. (PMID: 24429361)
      FEBS Lett. 2006 Mar 6;580(6):1553-64. (PMID: 16472808)
      West J Emerg Med. 2016 Nov;17(6):671-679. (PMID: 27833670)
      Virus Res. 2015 Aug 3;206:53-61. (PMID: 25660582)
      Front Cell Infect Microbiol. 2021 Sep 08;11:714088. (PMID: 34568093)
      Brief Bioinform. 2021 Mar 22;22(2):1297-1308. (PMID: 33757279)
      J Virol. 2014 Jul;88(14):8065-76. (PMID: 24807715)
      Mediators Inflamm. 2015;2015:509306. (PMID: 26609198)
      Nat Commun. 2016 Aug 26;7:12524. (PMID: 27561669)
      RNA Biol. 2021 May;18(5):669-687. (PMID: 33618611)
      J Virol. 2005 Aug;79(15):9556-65. (PMID: 16014917)
      Nat Commun. 2022 Feb 14;13(1):866. (PMID: 35165282)
      RNA Biol. 2021 May;18(5):759-766. (PMID: 33517840)
      Front Cell Infect Microbiol. 2023 Jun 02;13:1190870. (PMID: 37333844)
      RNA. 2012 Jul;18(7):1338-46. (PMID: 22635403)
      Mol Med Rep. 2013 Mar;7(3):791-8. (PMID: 23354650)
      Nucleic Acids Res. 2020 Dec 2;48(21):12055-12073. (PMID: 33179750)
      Global Health. 2017 Feb 8;13(1):9. (PMID: 28179007)
      Virus Res. 2015 Jan 22;196:105-12. (PMID: 25445350)
      Vaccines (Basel). 2023 Sep 12;11(9):. (PMID: 37766157)
      Curr Opin Struct Biol. 2015 Feb;30:79-88. (PMID: 25687935)
      Virus Genes. 2019 Apr;55(2):127-137. (PMID: 30632016)
      RNA Biol. 2022 Jan;19(1):1019-1044. (PMID: 36102368)
      J Virol. 2024 Feb 20;98(2):e0195423. (PMID: 38289102)
      BMC Genomics. 2010 Apr 28;11:270. (PMID: 20426822)
      Cell Rep. 2020 Feb 25;30(8):2472-2480.e4. (PMID: 32101729)
      J Virol. 2017 Mar 29;91(8):. (PMID: 28148804)
      J Virol. 2020 Aug 17;94(17):. (PMID: 32581100)
      PLoS Pathog. 2021 Dec 16;17(12):e1010091. (PMID: 34914813)
      J Neuroinflammation. 2015 Feb 18;12:30. (PMID: 25889446)
      Biochem Biophys Res Commun. 2010 Jan 1;391(1):1099-103. (PMID: 20005199)
      J Virol. 2015 Feb;89(3):1608-27. (PMID: 25410853)
      Arch Gesamte Virusforsch. 1961;10:672-83. (PMID: 13688253)
      PLoS One. 2023 Nov 3;18(11):e0294035. (PMID: 37922302)
      HIV Med. 2020 Apr;21(4):246-278. (PMID: 31756034)
      Front Microbiol. 2018 Jul 19;9:1621. (PMID: 30072977)
      Nat Rev Immunol. 2016 Apr 28;16(5):279-94. (PMID: 27121651)
      FASEB J. 2020 Jun;34(6):7283-7294. (PMID: 32277848)
      Science. 2021 May 14;372(6543):. (PMID: 33986151)
      J Virol. 2012 Jun;86(12):6889-98. (PMID: 22496226)
      Proc Natl Acad Sci U S A. 2016 Feb 2;113(5):1369-74. (PMID: 26787872)
      Proc Natl Acad Sci U S A. 2014 Feb 18;111(7):2746-51. (PMID: 24550303)
      Proc Natl Acad Sci U S A. 2020 May 19;117(20):11038-11047. (PMID: 32366663)
      Cell Host Microbe. 2016 Mar 9;19(3):409-23. (PMID: 26962949)
      Front Microbiol. 2020 Feb 14;11:24. (PMID: 32117091)
      Viruses. 2023 Jul 28;15(8):. (PMID: 37631989)
      J Immunol. 2015 Sep 1;195(5):1911-20. (PMID: 26297790)
      Nature. 1998 Feb 19;391(6669):806-11. (PMID: 9486653)
      Viruses. 2023 Mar 17;15(3):. (PMID: 36992484)
      Ann Clin Biochem. 2016 Jul;53(Pt 4):466-76. (PMID: 26290515)
      J Gen Virol. 1997 Jan;78 ( Pt 1):23-9. (PMID: 9010281)
      Front Microbiol. 2017 May 15;8:824. (PMID: 28555130)
      Oncotarget. 2014 Jul 30;5(14):5782-97. (PMID: 25051363)
      BMC Res Notes. 2014 Jan 09;7:22. (PMID: 24405943)
      Annu Rev Virol. 2021 Sep 29;8(1):51-72. (PMID: 34586874)
      J Infect. 2014 Oct;69(4):366-74. (PMID: 24907421)
      Pediatr Infect Dis J. 2020 Apr;39(4):e30-e36. (PMID: 32040014)
      J Virol. 2020 Aug 31;94(18):. (PMID: 32581095)
      Antiviral Res. 2018 Nov;159:13-25. (PMID: 30217649)
      J Mol Biol. 1966 Jun;17(2):428-39. (PMID: 5963076)
      Lancet Infect Dis. 2016 Jun;16(6):712-723. (PMID: 26874619)
      Bioinform Biol Insights. 2014 Aug 14;8:169-76. (PMID: 25210446)
      Curr Top Microbiol Immunol. 2015;391:181-217. (PMID: 26428375)
      Travel Med Infect Dis. 2023 Jul-Aug;54:102598. (PMID: 37271201)
      Arch Virol. 2016 Oct;161(10):2921-49. (PMID: 27424026)
      Antiviral Res. 2019 Mar;163:156-178. (PMID: 30597183)
      Front Microbiol. 2021 Aug 11;12:714409. (PMID: 34456895)
      Mol Biol Rep. 2024 Jan 16;51(1):107. (PMID: 38227137)
      J Virol. 2020 Feb 28;94(6):. (PMID: 31852785)
      Virol J. 2013 Jun 07;10:185. (PMID: 23759022)
      N Engl J Med. 2018 Jul 26;379(4):327-340. (PMID: 29897841)
      Virol J. 2016 May 28;13:84. (PMID: 27233361)
      Cell. 2018 Jul 12;174(2):350-362.e17. (PMID: 29887379)
      Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):3077-82. (PMID: 22308400)
      RNA. 2010 Nov;16(11):2068-74. (PMID: 20841420)
      Front Immunol. 2018 Sep 27;9:2099. (PMID: 30319604)
      PLoS Genet. 2019 Feb 19;15(2):e1007915. (PMID: 30779744)
      Virus Res. 2019 Jan 15;260:1-6. (PMID: 30412711)
      Lancet Infect Dis. 2021 Apr;21(4):517-528. (PMID: 33212067)
      Semin Cell Dev Biol. 2023 Sep 15;146:20-30. (PMID: 36581481)
      Lancet Glob Health. 2024 Feb;12(2):e257-e270. (PMID: 38245116)
      Acta Biochim Pol. 2016;63(4):623-630. (PMID: 27830839)
      Viruses. 2024 Mar 23;16(4):. (PMID: 38675839)
      Elife. 2015 Jan 29;4:. (PMID: 25633976)
      Int J Infect Dis. 2020 Mar;92:97-104. (PMID: 31945493)
      Nat Commun. 2020 May 5;11(1):2205. (PMID: 32371874)
      J Biol Chem. 2010 Oct 22;285(43):33358-33370. (PMID: 20716523)
      NPJ Vaccines. 2023 Apr 15;8(1):55. (PMID: 37061527)
      Expert Rev Vaccines. 2019 Dec;18(12):1229-1242. (PMID: 31779496)
      Front Cell Infect Microbiol. 2018 Aug 03;8:263. (PMID: 30123777)
      Nature. 2012 Nov 1;491(7422):125-8. (PMID: 23000900)
      Viruses. 2011 Jun;3(6):629-58. (PMID: 21994750)
      Viruses. 2017 Jul 13;9(7):. (PMID: 28703771)
      Nucleic Acids Res. 2019 Oct 10;47(18):9888-9901. (PMID: 31504775)
      J Infect. 2013 Oct;67(4):329-41. (PMID: 23685241)
      Viruses. 2015 Sep 10;7(9):4911-28. (PMID: 26378568)
      Nat Commun. 2016 Jun 13;7:11730. (PMID: 27291871)
      Lancet. 1971 Jan 16;1(7690):105-6. (PMID: 4099602)
      Methods Mol Biol. 2017;1648:247-256. (PMID: 28766302)
      Virology. 2018 Sep;522:193-198. (PMID: 30036787)
      J Biol Chem. 2019 Nov 1;294(44):16282-16296. (PMID: 31519749)
      Int J Mol Sci. 2020 Sep 03;21(17):. (PMID: 32899429)
      Virol Sin. 2017 Feb;32(1):23-31. (PMID: 28124222)
      Wiley Interdiscip Rev RNA. 2016 Jan-Feb;7(1):129-43. (PMID: 26667656)
      Sci Rep. 2017 Nov 30;7(1):16625. (PMID: 29192224)
      Int J Environ Res Public Health. 2020 May 02;17(9):. (PMID: 32370141)
      Sci Rep. 2015 Jan 08;5:7675. (PMID: 25567797)
      Proc Natl Acad Sci U S A. 2018 Nov 6;115(45):11513-11518. (PMID: 30341219)
      Signal Transduct Target Ther. 2023 Dec 6;8(1):441. (PMID: 38057315)
      Cell Host Microbe. 2008 Dec 11;4(6):579-91. (PMID: 19064258)
      J Virol. 1996 Aug;70(8):5083-99. (PMID: 8764016)
      Genes Dev. 2015 Mar 15;29(6):567-84. (PMID: 25792595)
      Cell Res. 2018 Feb;28(2):157-171. (PMID: 29327729)
      Lancet. 2020 May 2;395(10234):1423-1433. (PMID: 32197105)
      PLoS One. 2022 Jan 10;17(1):e0261242. (PMID: 35007307)
      Virol Sin. 2024 Apr;39(2):218-227. (PMID: 38316363)
      Nucleic Acids Res. 2022 Jun 24;50(11):6511-6520. (PMID: 35648438)
      Cell Host Microbe. 2015 Mar 11;17(3):295-300. (PMID: 25766291)
      Science. 2015 Oct 9;350(6257):217-21. (PMID: 26138103)
      Parasit Vectors. 2014 Oct 22;7:488. (PMID: 25331963)
      Nucleic Acids Res. 2015 Dec 2;43(21):10321-37. (PMID: 26490959)
      Int J Med Sci. 2014 Apr 04;11(6):538-44. (PMID: 24782642)
    • Contributed Indexing:
      Keywords: DENV; immune response; microRNAs; ncRNAs; sfRNAs; virus–host cell interactions
    • Accession Number:
      0 (RNA, Untranslated)
      0 (RNA, Viral)
      0 (MicroRNAs)
    • Publication Date:
      Date Created: 20240525 Date Completed: 20240525 Latest Revision: 20240528
    • Publication Date:
      20240528
    • Accession Number:
      PMC11125801
    • Accession Number:
      10.3390/v16050804
    • Accession Number:
      38793685