T-DNA insertion in Arabidopsis caused coexisting chromosomal inversion and duplication at megabase level.

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  • Additional Information
    • Source:
      Publisher: Elsevier/North-Holland Country of Publication: Netherlands NLM ID: 7706761 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0038 (Electronic) Linking ISSN: 03781119 NLM ISO Abbreviation: Gene Subsets: MEDLINE
    • Publication Information:
      Original Publication: Amsterdam, Elsevier/North-Holland, 1976-
    • Subject Terms:
      Chromosome Inversion*/genetics ; Arabidopsis*/genetics ; DNA, Bacterial*/genetics ; Mutagenesis, Insertional* ; Gene Duplication*; Chromosomes, Plant/genetics ; Genome, Plant ; Phenotype ; Gene Expression Regulation, Plant
    • Abstract:
      Agrobacteria-mediated transformation is widely used in plant genetic engineering to introduce exogenous genes and create mutant lines through random T-DNA insertion and gene disruption. When T-DNA fragments are inserted into the plant genome, it could cause chromosomal abnormalities. In this study, we investigated the genetic basis of pleiotropic phenotypes observed in the T-DNA insertion mutant lnc161. We discovered that there are four T-DNA insertions present in the lnc161 genome, which disrupted the genes LNC161 (AT3G05035), AT3G57400, AT5G05630, and AT5G16450, respectively. However, none of these insertions were the causative mutation that leads to the lnc161 phenotypes. Strikingly, through genetic analyses and high throughput sequencing, we found an inversion of about 19.8 Mb sequences between LNC161 and AT3G57400. Moreover, the sequences between AT5G05630 and AT5G16450 (about 3.7 Mb) were translocated from chromosome 5 to chromosome 3, adjacent to the inversion sequences, and were duplicated. This duplication led to an up-regulation of genes expression in this region, potentially resulting in pleiotropic morphological traits in lnc161. Overall, this study provides a case showing complex chromosomal re-arrangement induced by T-DNA insertion.
      Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
      (Copyright © 2024 Elsevier B.V. All rights reserved.)
    • Contributed Indexing:
      Keywords: Arabidopsis; Chromosomal inversion; Duplication; T-DNA insertion
    • Accession Number:
      0 (T-DNA)
      0 (DNA, Bacterial)
    • Publication Date:
      Date Created: 20240518 Date Completed: 20240609 Latest Revision: 20240609
    • Publication Date:
      20240610
    • Accession Number:
      10.1016/j.gene.2024.148577
    • Accession Number:
      38762016