A molecular atlas of plastid and mitochondrial proteins reveals organellar remodeling during plant evolutionary transitions from algae to angiosperms.

Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE

Original Publication: San Francisco, CA : Public Library of Science, [2003]-

Plastids*/metabolism ; Plastids*/genetics ; Magnoliopsida*/genetics ; Magnoliopsida*/metabolism ; Mitochondrial Proteins*/metabolism ; Mitochondrial Proteins*/genetics ; Phylogeny*; Evolution, Molecular ; Biological Evolution ; Mitochondria/metabolism ; Mitochondria/genetics ; Plant Proteins/metabolism ; Plant Proteins/genetics ; Proteome/metabolism ; Symbiosis/genetics ; Organelles/metabolism ; Organelles/genetics

Algae and plants carry 2 organelles of endosymbiotic origin that have been co-evolving in their host cells for more than a billion years. The biology of plastids and mitochondria can differ significantly across major lineages and organelle changes likely accompanied the adaptation to new ecological niches such as the terrestrial habitat. Based on organelle proteome data and the genomes of 168 phototrophic (Archaeplastida) versus a broad range of 518 non-phototrophic eukaryotes, we screened for changes in plastid and mitochondrial biology across 1 billion years of evolution. Taking into account 331,571 protein families (or orthogroups), we identify 31,625 protein families that are unique to primary plastid-bearing eukaryotes. The 1,906 and 825 protein families are predicted to operate in plastids and mitochondria, respectively. Tracing the evolutionary history of these protein families through evolutionary time uncovers the significant remodeling the organelles experienced from algae to land plants. The analyses of gained orthogroups identifies molecular changes of organelle biology that connect to the diversification of major lineages and facilitated major transitions from chlorophytes en route to the global greening and origin of angiosperms.
Competing Interests: The authors have declared that no competing interests exist.
(Copyright: © 2024 K. Raval et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)

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0 (Mitochondrial Proteins)
0 (Plant Proteins)
0 (Proteome)

Date Created: 20240507 Date Completed: 20240529 Latest Revision: 20240531

20240531

PMC11135702

10.1371/journal.pbio.3002608

38713727