Treasure hunt for peptides with undefined chemical modifications: Proteomics identification of differential albumin adducts of 2-nitroimidazole-indocyanine green in hypoxic tumor.

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    • Source:
      Publisher: Wiley Country of Publication: England NLM ID: 9504818 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1096-9888 (Electronic) Linking ISSN: 10765174 NLM ISO Abbreviation: J Mass Spectrom Subsets: MEDLINE
    • Publication Information:
      Original Publication: Chichester, UK : Wiley, c1995-
    • Subject Terms:
    • Abstract:
      2-Nitroimidazole is a well-known chemical probe targeting hypoxic environments of solid tumors, and its derivatives are widely used as imaging agents to investigate tissue and tumor hypoxia. However, the underlying chemistry for the hypoxia-detection capability of 2-nitroimidazole is still unclear. In this study, we deployed a biotin conjugate of 2-nitroimidazole-indocyanine green (2-nitro-ICG) for the investigation of in vivo hypoxia-probing mechanism of 2-nitro-ICG compounds. By implementing mass spectrometry-based proteomics and exhaustive data mining, we report that 2-nitro-ICG and its fragments modify mouse serum albumin as the primary protein target but at two structurally distinct sites and possibly via two different mechanisms. The identification of probe-modified peptides not only contributes to the understanding of the in vivo metabolism of 2-nitroimidazole compounds but also demonstrates a competent analytical workflow that enables the search for peptides with undefined modifications in complex proteome digests.
      (© 2019 John Wiley & Sons, Ltd.)
    • References:
      Hockel M, Vaupel P. Tumor hypoxia: definitions and current clinical, biologic, and molecular aspects. JNCI J Natl Cancer Inst. 2001;93:266.
      Vaupel P, Kallinowski F, Okunieff P. Blood flow, oxygen and nutrient supply, and metabolic microenvironment of human tumors: a review. Cancer Res. 1989;49:6449.
      Brahimi-Horn MC, Chiche J, Pouyssegur J. Hypoxia and cancer. J Mol Med (Berl). 2007;85:1301.
      Vaupel P, Mayer A. Hypoxia in cancer: significance and impact on clinical outcome. Cancer Metastasis Rev. 2007;26:225.
      Brown JM, Wilson WR. Exploiting tumour hypoxia in cancer treatment. Nat Rev Cancer. 2004;4:437.
      Wilson WR, Hay MP. Targeting hypoxia in cancer therapy. Nat Rev Cancer. 2011;11:393.
      Challapalli A, Carroll L, Aboagye EO. Molecular mechanisms of hypoxia in cancer. Clin Transl Imaging. 2017;5:225.
      Biswal NC, Pavlik C, Smith MB, et al. Imaging tumor hypoxia by near-infrared fluorescence tomography. J Biomed Opt. 2011;16:066009.
      Pavlik C, Biswal NC, Gaenzler FC, et al. Synthesis and fluorescent characteristics of imidazole-indocyanine green conjugates. Dyes Pigments. 2011;89:9.
      Mohammad I, Stanford C, Morton MD, Zhu Q, Smith MB. Structurally modified indocyanine green dyes. Modification of the polyene linker. Dyes Pigments. 2013;99:275.
      Xu Y, Zanganeh S, Mohammad I, et al. Targeting tumor hypoxia with 2-nitroimidazole-indocyanine green dye conjugates. J Biomed Opt. 2013;18:66009.
      Zanganeh S, Li H, Kumavor PD, et al. Photoacoustic imaging enhanced by indocyanine green-conjugated single-wall carbon nanotubes. J Biomed Opt. 2013;18:096006.
      Zhou F, Zanganeh S, Mohammad I, et al. Targeting tumor hypoxia: a third generation 2-nitroimidazole-indocyanine dye-conjugate with improved fluorescent yield. Org Biomol Chem. 2015;13:11220.
      Raleigh JA, Liu SF. Reductive fragmentation of 2-nitroimidazoles in the presence of nitroreductases-glyoxal formation from misonidazole. Biochem Pharmacol. 1983;32:1444.
      Raleigh JA, Koch CJ. Importance of thiols in the reductive binding of 2-nitroimidazoles to macromolecules. Biochem Pharmacol. 1990;40:2457.
      Trochine A, Creek DJ, Faral-Tello P, Barrett MP, Robello C. Benznidazole biotransformation and multiple targets in Trypanosoma cruzi revealed by metabolomics. PLoS Negl Trop Dis. 2014;8:e2844.
      Masaki Y, Shimizu Y, Yoshioka T, et al. The accumulation mechanism of the hypoxia imaging probe “FMISO” by imaging mass spectrometry: possible involvement of low-molecular metabolites. Sci Rep. 2015;5:16802.
      Masaki Y, Shimizu Y, Yoshioka T, et al. Imaging mass spectrometry revealed the accumulation characteristics of the 2-nitroimidazole-based agent “Pimonidazole” in hypoxia. PLoS One. 2016;11:e0161639.
      Mascini NE, Cheng M, Jiang L, et al. Mass spectrometry imaging of the hypoxia marker pimonidazole in a breast tumor model. Anal Chem. 2016;88:3107.
      Arteel GE, Thurman RG, Raleigh JA. Reductive metabolism of the hypoxia marker pimonidazole is regulated by oxygen tension independent of the pyridine nucleotide redox state. Eur J Biochem. 1998;253:743.
      Nesvizhskii AI, Vitek O, Aebersold R. Analysis and validation of proteomic data generated by tandem mass spectrometry. Nat Methods. 2007;4:787.
      Cox J, Mann M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol. 2008;26:1367.
      Chick JM, Kolippakkam D, Nusinow DP, et al. A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides. Nat Biotechnol. 2015;33:743.
      Ballard TE, Dahal UP, Bessire AJ, Schneider RP, Geoghegan KF, Vaz AD. A tag-free collisionally induced fragmentation approach to detect drug-adducted proteins by mass spectrometry. Rapid Commun Mass Spectrom. 2015;29:2175.
      Dorri Y. Two-Dimensional Gel Electrophoresis: Vertical Isoelectric Focusing. Totowa, NJ: Humana Press; 2012:235.
      Chambers MC, Maclean B, Burke R, et al. A cross-platform toolkit for mass spectrometry and proteomics. Nat Biotechnol. 2012;30:918.
      UniProt Consortium. The universal protein resource (UniProt). Nucleic Acids Res. 2008;36:D190.
      Waterhouse A, Bertoni M, Bienert S, et al. SWISS-MODEL: homology modelling of protein structures and complexes. Nucleic Acids Res. 2018;46:W296.
      Majorek KA, Porebski PJ, Dayal A, et al. Structural and immunologic characterization of bovine, horse, and rabbit serum albumins. Mol Immunol. 2012;52:174.
      Trott O, Olson AJ. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J Comput Chem. 2010;31:455.
      Morris GM, Huey R, Lindstrom W, et al. AutoDock4 and AutoDockTools4: automated docking with selective receptor flexibility. J Comput Chem. 2009;30:2785.
      Hanwell MD, Curtis DE, Lonie DC, Vandermeersch T, Zurek E, Hutchison GR. Avogadro: an advanced semantic chemical editor, visualization, and analysis platform. J Chem. 2012;4:17.
      Cravatt BF, Wright AT, Kozarich JW. Activity-based protein profiling: from enzyme chemistry to proteomic chemistry. Annu Rev Biochem. 2008;77:383.
      Diamandis EP, Christopoulos TK. The biotin-(strept)avidin system: principles and applications in biotechnology. Clin Chem. 1991;37:625.
      Desmettre T, Devoisselle JM, Mordon S. Fluorescence properties and metabolic features of indocyanine green (ICG) as related to angiography. Surv Ophthalmol. 2000;45:15.
      Hamann FM, Brehm R, Pauli J, et al. Controlled modulation of serum protein binding and biodistribution of asymmetric cyanine dyes by variation of the number of sulfonate groups. Mol Imaging. 2011;10:258.
      Okuda K, Okabe Y, Kadonosono T, et al. 2-Nitroimidazole-tricarbocyanine conjugate as a near-infrared fluorescent probe for in vivo imaging of tumor hypoxia. Bioconjug Chem. 2012;23:324.
      Williams CF, Lloyd D, Kolarich D, et al. Disrupted intracellular redox balance of the diplomonad fish parasite Spironucleus vortens by 5-nitroimidazoles and garlic-derived compounds. Vet Parasitol. 2012;190:62.
      Na S, Bandeira N, Paek E. Fast multi-blind modification search through tandem mass spectrometry. Mol Cell Proteomics. 2012;11:M111 010199.
      Needleman SB, Wunsch CD. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol. 1970;48:443.
      Elias JE, Gygi SP. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat Methods. 2007;4:207.
      Mitrofanov E, Muskat T, Grotemeyer J. Indocyanine green MS/MS investigations using femtosecond laser-pulse photodissociation and collision-induced dissociation. Eur J Mass Spectrom (Chichester). 2018;24:299.
      Ang CW, Jarrad AM, Cooper MA, Blaskovich MAT. Nitroimidazoles: molecular fireworks that combat a broad spectrum of infectious diseases. J Med Chem. 2017;60:7636.
      Penha FM, Rodrigues EB, Maia M, et al. Biochemical analysis and decomposition products of indocyanine green in relation to solvents, dye concentrations and laser exposure. Ophthalmologica. 2013;230(Suppl 2):59.
      Geiger T, Cox J, Mann M. Proteomics on an Orbitrap benchtop mass spectrometer using all-ion fragmentation. Mol Cell Proteomics. 2010;9:2252.
      Turriziani B, Garcia-Munoz A, Pilkington R, Raso C, Kolch W, von Kriegsheim A. On-beads digestion in conjunction with data-dependent mass spectrometry: a shortcut to quantitative and dynamic interaction proteomics. Biology (Basel). 2014;3:320.
      Curry S, Mandelkow H, Brick P, Franks N. Crystal structure of human serum albumin complexed with fatty acid reveals an asymmetric distribution of binding sites. Nat Struct Biol. 1998;5:827.
      Kragh-Hansen U, Chuang VT, Otagiri M. Practical aspects of the ligand-binding and enzymatic properties of human serum albumin. Biol Pharm Bull. 2002;25:695.
      Hobert EM, Doerner AE, Walker AS, Schepartz A. Effective molarity redux: proximity as a guiding force in chemistry and biology. Isr J Chem. 2013;53:567.
      Ursini F, Maiorino M, Forman HJ. Redox homeostasis: the Golden Mean of healthy living. Redox Biol. 2016;8:205.
      Peters T. All About Albumin: Biochemistry, Genetics, and Medical Applications. San Diego: Academic Press; 1995:230.
      Monks J, Neville MC. Albumin transcytosis across the epithelium of the lactating mouse mammary gland. J Physiol. 2004;560:267.
      Shamay A, Homans R, Fuerman Y, et al. Expression of albumin in nonhepatic tissues and its synthesis by the bovine mammary gland. J Dairy Sci. 2005;88:569.
      Peters T. All About Albumin: Biochemistry, Genetics, and Medical Applications. San Diego: Academic Press; 1995:233.
      Soreide JA, Lea OA, Kvinnsland S. Cytosol albumin content in operable breast cancer. Correlations to steroid hormone receptors, other prognostic factors and prognosis. Acta Oncol. 1991;30:797.
    • Contributed Indexing:
      Keywords: 2-nitroimidazole; albumin adducts; chemical probe; hypoxia; proteomics
    • Accession Number:
      0 (Albumins)
      0 (Nitroimidazoles)
      0 (Peptides)
      0 (Proteome)
      IX6J1063HV (Indocyanine Green)
    • Publication Date:
      Date Created: 20190526 Date Completed: 20201208 Latest Revision: 20201214
    • Publication Date:
      20231215
    • Accession Number:
      10.1002/jms.4376
    • Accession Number:
      31128078