CyanoClust: comparative genome resources of cyanobacteria and plastids.

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  • Author(s): Sasaki NV;Sasaki NV; Sato N
  • Source:
    Database : the journal of biological databases and curation [Database (Oxford)] 2010; Vol. 2010, pp. bap025. Date of Electronic Publication: 2010 Jan 08.
  • Publication Type:
    Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
  • Language:
    English
  • Additional Information
    • Source:
      Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1758-0463 (Electronic) Linking ISSN: 17580463 NLM ISO Abbreviation: Database (Oxford) Subsets: MEDLINE
    • Publication Information:
      Original Publication: Oxford : Oxford Journals, 2009-
    • Subject Terms:
      Databases, Genetic* ; Genome, Bacterial*; Cyanobacteria/*genetics ; Plastids/*genetics; Bacterial Proteins/genetics ; Cyanobacteria/metabolism ; Databases, Protein ; Evolution, Molecular ; Genomics/statistics & numerical data ; Internet ; Photosynthesis/genetics ; Plastids/metabolism ; Search Engine ; Sequence Homology, Amino Acid
    • Abstract:
      Cyanobacteria, which perform oxygen-evolving photosynthesis as do chloroplasts of plants and algae, are one of the best-studied prokaryotic phyla and one from which many representative genomes have been sequenced. Lack of a suitable comparative genomic database has been a problem in cyanobacterial genomics because many proteins involved in physiological functions such as photosynthesis and nitrogen fixation are not catalogued in commonly used databases, such as Clusters of Orthologous Proteins (COG). CyanoClust is a database of homolog groups in cyanobacteria and plastids that are produced by the program Gclust. We have developed a web-server system for the protein homology database featuring cyanobacteria and plastids. Database URL: http://cyanoclust.c.u-tokyo.ac.jp/.
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    • Accession Number:
      0 (Bacterial Proteins)
    • Publication Date:
      Date Created: 20100430 Date Completed: 20101206 Latest Revision: 20220311
    • Publication Date:
      20221213
    • Accession Number:
      PMC2860898
    • Accession Number:
      10.1093/database/bap025
    • Accession Number:
      20428314