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Care4Rare Canada: Outcomes from a decade of network science for rare disease gene discovery.
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- Author(s): Boycott, Kym M.1 (AUTHOR) ; Hartley, Taila1 (AUTHOR); Kernohan, Kristin D.1 (AUTHOR); Dyment, David A.1 (AUTHOR); Howley, Heather1 (AUTHOR); Innes, A. Micheil2 (AUTHOR); Bernier, Francois P.2 (AUTHOR); Brudno, Michael3 (AUTHOR)
- Source:
American Journal of Human Genetics. Nov2022, Vol. 109 Issue 11, p1947-1959. 13p.
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- Abstract:
The past decade has witnessed a rapid evolution in rare disease (RD) research, fueled by the availability of genome-wide (exome and genome) sequencing. In 2011, as this transformative technology was introduced to the research community, the Care4Rare Canada Consortium was launched: initially as FORGE, followed by Care4Rare, and Care4Rare SOLVE. Over what amounted to three eras of diagnosis and discovery, the Care4Rare Consortium used exome sequencing and, more recently, genome and other 'omic technologies to identify the molecular cause of unsolved RDs. We achieved a diagnostic yield of 34% (623/1,806 of participating families), including the discovery of deleterious variants in 121 genes not previously associated with disease, and we continue to study candidate variants in novel genes for 145 families. The Consortium has made significant contributions to RD research, including development of platforms for data collection and sharing and instigating a Canadian network to catalyze functional characterization research of novel genes. The Consortium was instrumental to implementing genome-wide sequencing as a publicly funded test for RD diagnosis in Canada. Despite the successes of the past decade, the challenge of solving all RDs remains enormous, and the work is far from over. We must leverage clinical and 'omic data for secondary use, develop tools and policies to support safe data sharing, continue to explore the utility of new and emerging technologies, and optimize research protocols to delineate complex disease mechanisms. Successful approaches in each of these realms is required to offer diagnostic clarity to all families with RDs. After a decade of collaborative network science in Canada and three eras of RD gene discovery, the Care4Rare Canada Consortium recognized it was time to reflect on the lessons learned from our successes to best meet the challenges of RD diagnosis and discovery in the decade to come. [ABSTRACT FROM AUTHOR]
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